miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 121723 0.66 0.818593
Target:  5'- cGUaCUCCAUcaccgagGGCACCGCG--GUCGUg -3'
miRNA:   3'- uCA-GAGGUG-------CCGUGGCGCugCAGCAg -5'
21378 5' -58.4 NC_004812.1 + 23803 0.66 0.810971
Target:  5'- cGG-CUCCAUGcGCGCCGCG-CGgggCGg- -3'
miRNA:   3'- -UCaGAGGUGC-CGUGGCGCuGCa--GCag -5'
21378 5' -58.4 NC_004812.1 + 152801 0.66 0.810971
Target:  5'- cGUCgCCgGCGGCGCCGaGGcCGcCGUCg -3'
miRNA:   3'- uCAGaGG-UGCCGUGGCgCU-GCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 93119 0.66 0.810971
Target:  5'- uGUCgggCgGCGGCGucugCGUGACGuUCGUCg -3'
miRNA:   3'- uCAGa--GgUGCCGUg---GCGCUGC-AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 127752 0.66 0.810971
Target:  5'- -----gCGCGGCGCgGCGGCGggguccgCGUCg -3'
miRNA:   3'- ucagagGUGCCGUGgCGCUGCa------GCAG- -5'
21378 5' -58.4 NC_004812.1 + 32263 0.66 0.810971
Target:  5'- cGUcCUCC-CGGU-CCGCGGCGUCc-- -3'
miRNA:   3'- uCA-GAGGuGCCGuGGCGCUGCAGcag -5'
21378 5' -58.4 NC_004812.1 + 55656 0.66 0.810116
Target:  5'- ---gUCCGCGGCGgCGCGccccgccACGUCGg- -3'
miRNA:   3'- ucagAGGUGCCGUgGCGC-------UGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 15122 0.66 0.810116
Target:  5'- cGGUa-CgGCGGCGCCcccgacgGCGACGUCG-Ca -3'
miRNA:   3'- -UCAgaGgUGCCGUGG-------CGCUGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 43541 0.66 0.831004
Target:  5'- uGUCgcggcucgcugccgCCGCGGCcgacgccgGCCGCGGcCGUcCGUCc -3'
miRNA:   3'- uCAGa-------------GGUGCCG--------UGGCGCU-GCA-GCAG- -5'
21378 5' -58.4 NC_004812.1 + 107205 0.66 0.819432
Target:  5'- cGGgg-CCACGGCgcggGCCGCcugGGCGUCGa- -3'
miRNA:   3'- -UCagaGGUGCCG----UGGCG---CUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 98234 0.66 0.810971
Target:  5'- uGGUCUCCGCGGgGCgGCG-CGg---- -3'
miRNA:   3'- -UCAGAGGUGCCgUGgCGCuGCagcag -5'
21378 5' -58.4 NC_004812.1 + 131518 0.67 0.757247
Target:  5'- cGUCggcgcgCgGCGGCGCCGCccCGUCGa- -3'
miRNA:   3'- uCAGa-----GgUGCCGUGGCGcuGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 145103 0.67 0.766512
Target:  5'- cGUCaacCUGCaGCugCGCGACG-CGUCg -3'
miRNA:   3'- uCAGa--GGUGcCGugGCGCUGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 1084 0.67 0.802356
Target:  5'- --cCUCCugGGUACCugGCGcACGUCuUCu -3'
miRNA:   3'- ucaGAGGugCCGUGG--CGC-UGCAGcAG- -5'
21378 5' -58.4 NC_004812.1 + 147454 0.67 0.802356
Target:  5'- uGUCccCCACGGUccgcGCCGCGACGcUCc-- -3'
miRNA:   3'- uCAGa-GGUGCCG----UGGCGCUGC-AGcag -5'
21378 5' -58.4 NC_004812.1 + 133547 0.67 0.793594
Target:  5'- uGGcCaCCAUGcGgGCCGCGGCGUCGa- -3'
miRNA:   3'- -UCaGaGGUGC-CgUGGCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 51317 0.67 0.79271
Target:  5'- aAGcC-CCACGGCACCGacgaaguagaggcCGACGUCu-- -3'
miRNA:   3'- -UCaGaGGUGCCGUGGC-------------GCUGCAGcag -5'
21378 5' -58.4 NC_004812.1 + 32607 0.67 0.784694
Target:  5'- gGGUCgua--GGCGCCGCGgGCGUCG-Ca -3'
miRNA:   3'- -UCAGaggugCCGUGGCGC-UGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 98694 0.67 0.793594
Target:  5'- cGGUCgaaccgCCgcgccggggGCGGCGgCGCGGgGUCGUUc -3'
miRNA:   3'- -UCAGa-----GG---------UGCCGUgGCGCUgCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 102736 0.67 0.793594
Target:  5'- aAGUCcgCCAUGucgagggacGCguagGCgGCGGCGUCGUCg -3'
miRNA:   3'- -UCAGa-GGUGC---------CG----UGgCGCUGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.