miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 100823 0.71 0.531751
Target:  5'- cGUCUCggggGCgGGCGCCGCGACGcCGg- -3'
miRNA:   3'- uCAGAGg---UG-CCGUGGCGCUGCaGCag -5'
21378 5' -58.4 NC_004812.1 + 72204 0.71 0.550165
Target:  5'- gGGUCgucgcggggcgUCCGCGGCcucgcggACUGCGGCGgggCGUCc -3'
miRNA:   3'- -UCAG-----------AGGUGCCG-------UGGCGCUGCa--GCAG- -5'
21378 5' -58.4 NC_004812.1 + 91585 0.71 0.580602
Target:  5'- aGGUCgaCCAgGGC-CCGCGACGUgCGg- -3'
miRNA:   3'- -UCAGa-GGUgCCGuGGCGCUGCA-GCag -5'
21378 5' -58.4 NC_004812.1 + 114959 0.71 0.531751
Target:  5'- ---gUCCGCGGCGuuGgCGACGUCGg- -3'
miRNA:   3'- ucagAGGUGCCGUggC-GCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 32036 0.7 0.600429
Target:  5'- cGGgggCUCCA-GGC-CCGCGaugaccgccucgGCGUCGUCg -3'
miRNA:   3'- -UCa--GAGGUgCCGuGGCGC------------UGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 1667 0.7 0.640294
Target:  5'- cGUUggCCGCGGCGCCGCGGCccgcccgCGg- -3'
miRNA:   3'- uCAGa-GGUGCCGUGGCGCUGca-----GCag -5'
21378 5' -58.4 NC_004812.1 + 54557 0.7 0.610379
Target:  5'- --aCUCCgACGGCGCCGgGGCGcCG-Cg -3'
miRNA:   3'- ucaGAGG-UGCCGUGGCgCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 41364 0.7 0.610379
Target:  5'- ----aCCACGcacCACCGgGACGUCGUCu -3'
miRNA:   3'- ucagaGGUGCc--GUGGCgCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 135715 0.7 0.610379
Target:  5'- gGGggUCCACGGCaggucucuccgACCGCGAgGcCGUCc -3'
miRNA:   3'- -UCagAGGUGCCG-----------UGGCGCUgCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 79281 0.7 0.619347
Target:  5'- --cUUCCAUGGCcCCGUccucgucgucuucGGCGUCGUCg -3'
miRNA:   3'- ucaGAGGUGCCGuGGCG-------------CUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 97144 0.7 0.620344
Target:  5'- -cUCUCCGCGGUcgcgugguugAUCGcCGGgGUCGUCg -3'
miRNA:   3'- ucAGAGGUGCCG----------UGGC-GCUgCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 22483 0.7 0.621341
Target:  5'- uAGUCUUCcccgaccccaucggcGCGcggaccaccgucacGCACCGCGACGUCGg- -3'
miRNA:   3'- -UCAGAGG---------------UGC--------------CGUGGCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 123157 0.7 0.640294
Target:  5'- cGUCgaCgACGGCG--GCGGCGUCGUCg -3'
miRNA:   3'- uCAGa-GgUGCCGUggCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 81165 0.7 0.600429
Target:  5'- cGcCUCCGCGGCgacccggccGCCGCGGCGgagcugGUCc -3'
miRNA:   3'- uCaGAGGUGCCG---------UGGCGCUGCag----CAG- -5'
21378 5' -58.4 NC_004812.1 + 77154 0.7 0.610379
Target:  5'- cGUCUCgGcCGGCAgcccgcCCGCGGCGgcgcCGUCc -3'
miRNA:   3'- uCAGAGgU-GCCGU------GGCGCUGCa---GCAG- -5'
21378 5' -58.4 NC_004812.1 + 92545 0.7 0.617353
Target:  5'- cGUcCUCCuccucaucgccggcACGGC-CCGUGGcCGUCGUCg -3'
miRNA:   3'- uCA-GAGG--------------UGCCGuGGCGCU-GCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 17725 0.7 0.600429
Target:  5'- cAGgCUCUGCGGCGCCGCggaGACGUaggccaUGUCc -3'
miRNA:   3'- -UCaGAGGUGCCGUGGCG---CUGCA------GCAG- -5'
21378 5' -58.4 NC_004812.1 + 58412 0.7 0.600429
Target:  5'- cGUCcugCCGCGGCcgauggaagcgGCCGCGGagccgccggugcUGUCGUCg -3'
miRNA:   3'- uCAGa--GGUGCCG-----------UGGCGCU------------GCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 69868 0.7 0.600429
Target:  5'- gGGUCggCC-CGGCGCUGguCGcCGUCGUCg -3'
miRNA:   3'- -UCAGa-GGuGCCGUGGC--GCuGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 33702 0.7 0.590501
Target:  5'- cGUCgcggCCGuCGGCcgcuACCGCGACGacuucaUCGUCu -3'
miRNA:   3'- uCAGa---GGU-GCCG----UGGCGCUGC------AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.