miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 25695 0.67 0.784694
Target:  5'- cGUCgUCCGCGGgGCCGgCGACGccccCGg- -3'
miRNA:   3'- uCAG-AGGUGCCgUGGC-GCUGCa---GCag -5'
21378 5' -58.4 NC_004812.1 + 27293 0.66 0.810971
Target:  5'- cGUCgCCgGCGGCGCCGaGGcCGcCGUCg -3'
miRNA:   3'- uCAGaGG-UGCCGUGGCgCU-GCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 28435 0.67 0.775665
Target:  5'- cGUCUCCGCcaGGCGCCGaCGcaGCGcCG-Cg -3'
miRNA:   3'- uCAGAGGUG--CCGUGGC-GC--UGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 28720 0.66 0.819432
Target:  5'- cGUCUaCCugGcGCuggACCGCGACGcCG-Cg -3'
miRNA:   3'- uCAGA-GGugC-CG---UGGCGCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 31544 0.68 0.718252
Target:  5'- cGGUCUgCACGcgagcgacgaacGCgaccucgGCCGCGACGUCGa- -3'
miRNA:   3'- -UCAGAgGUGC------------CG-------UGGCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 32036 0.7 0.600429
Target:  5'- cGGgggCUCCA-GGC-CCGCGaugaccgccucgGCGUCGUCg -3'
miRNA:   3'- -UCa--GAGGUgCCGuGGCGC------------UGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 32131 0.68 0.71922
Target:  5'- cGGgggCUCCuccccgcccggGCGGCGCCGCGGCcgccCGUUg -3'
miRNA:   3'- -UCa--GAGG-----------UGCCGUGGCGCUGca--GCAG- -5'
21378 5' -58.4 NC_004812.1 + 32263 0.66 0.810971
Target:  5'- cGUcCUCC-CGGU-CCGCGGCGUCc-- -3'
miRNA:   3'- uCA-GAGGuGCCGuGGCGCUGCAGcag -5'
21378 5' -58.4 NC_004812.1 + 32568 0.7 0.640294
Target:  5'- cGUUggCCGCGGCGCCGCGGCccgcccgCGg- -3'
miRNA:   3'- uCAGa-GGUGCCGUGGCGCUGca-----GCag -5'
21378 5' -58.4 NC_004812.1 + 32607 0.67 0.784694
Target:  5'- gGGUCgua--GGCGCCGCGgGCGUCG-Ca -3'
miRNA:   3'- -UCAGaggugCCGUGGCGC-UGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 33236 0.66 0.851587
Target:  5'- gGGUCUCCGCGGaggACgGgGgGCG-CGUCc -3'
miRNA:   3'- -UCAGAGGUGCCg--UGgCgC-UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 33330 0.67 0.802356
Target:  5'- --cCUCCGCGGgGCCGcCGAcgagcuccucaaCGUgGUCa -3'
miRNA:   3'- ucaGAGGUGCCgUGGC-GCU------------GCAgCAG- -5'
21378 5' -58.4 NC_004812.1 + 33702 0.7 0.590501
Target:  5'- cGUCgcggCCGuCGGCcgcuACCGCGACGacuucaUCGUCu -3'
miRNA:   3'- uCAGa---GGU-GCCG----UGGCGCUGC------AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 34762 0.68 0.738409
Target:  5'- uGGUCgCCGCGGcCGCCGCGGCc-CG-Ca -3'
miRNA:   3'- -UCAGaGGUGCC-GUGGCGCUGcaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 35460 0.69 0.699746
Target:  5'- cAG-CgCUGCaGCGCCGCGGCGUCGg- -3'
miRNA:   3'- -UCaGaGGUGcCGUGGCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 35992 0.66 0.849275
Target:  5'- cGUCUCCACgaugaggcgcuccaGGCugCgguggcgggcgGCGAUGUCGg- -3'
miRNA:   3'- uCAGAGGUG--------------CCGugG-----------CGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 38764 0.66 0.851587
Target:  5'- cGGUCguaGCGGCGCCccGCG-CGUCG-Cg -3'
miRNA:   3'- -UCAGaggUGCCGUGG--CGCuGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 38773 0.69 0.689925
Target:  5'- uGGUCaccaggUCCGCGcGCACgCGCGugGUCu-- -3'
miRNA:   3'- -UCAG------AGGUGC-CGUG-GCGCugCAGcag -5'
21378 5' -58.4 NC_004812.1 + 38853 0.72 0.484463
Target:  5'- uGGUCcuccugcaugUCCAgcaggUGGCG-CGCGACGUCGUCg -3'
miRNA:   3'- -UCAG----------AGGU-----GCCGUgGCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 39075 0.67 0.773844
Target:  5'- uGUCggcgugcgugagCCGCGGCACgGCcaccGACGgccgCGUCg -3'
miRNA:   3'- uCAGa-----------GGUGCCGUGgCG----CUGCa---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.