miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 138095 0.69 0.680058
Target:  5'- --gUUCCGCGGCugucgcuccUCGCGGCgGUCGUCu -3'
miRNA:   3'- ucaGAGGUGCCGu--------GGCGCUG-CAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 137952 0.69 0.699746
Target:  5'- -cUUUCC-CGGCGCgGCGGCcccUCGUCg -3'
miRNA:   3'- ucAGAGGuGCCGUGgCGCUGc--AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 137725 0.67 0.802356
Target:  5'- cGGcCUCCGCGGCGacCCGCGGgcCGcCGa- -3'
miRNA:   3'- -UCaGAGGUGCCGU--GGCGCU--GCaGCag -5'
21378 5' -58.4 NC_004812.1 + 135715 0.7 0.610379
Target:  5'- gGGggUCCACGGCaggucucuccgACCGCGAgGcCGUCc -3'
miRNA:   3'- -UCagAGGUGCCG-----------UGGCGCUgCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 135618 0.66 0.827731
Target:  5'- -----gCGCGGCGgCGaCGACGUCGUUc -3'
miRNA:   3'- ucagagGUGCCGUgGC-GCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 135192 0.71 0.570738
Target:  5'- --gCUUCAaggGGCGCUGCGACG-CGUCg -3'
miRNA:   3'- ucaGAGGUg--CCGUGGCGCUGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 134559 0.66 0.819432
Target:  5'- gGG-CUCCGgGGCGaaaaaaacguCCaCGugGUCGUCg -3'
miRNA:   3'- -UCaGAGGUgCCGU----------GGcGCugCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 133583 0.66 0.810971
Target:  5'- cGUCcugCCggcgGCGGUAgCGCGcCGUUGUCg -3'
miRNA:   3'- uCAGa--GG----UGCCGUgGCGCuGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 133547 0.67 0.793594
Target:  5'- uGGcCaCCAUGcGgGCCGCGGCGUCGa- -3'
miRNA:   3'- -UCaGaGGUGC-CgUGGCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 132799 0.66 0.851587
Target:  5'- gGGUCgccgCCccgcGCGGCgcgcauggaGCCGCGcACG-CGUCg -3'
miRNA:   3'- -UCAGa---GG----UGCCG---------UGGCGC-UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 131518 0.67 0.757247
Target:  5'- cGUCggcgcgCgGCGGCGCCGCccCGUCGa- -3'
miRNA:   3'- uCAGa-----GgUGCCGUGGCGcuGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 130856 0.71 0.551139
Target:  5'- gGGUCggCgGgGGCGCgGCGGCGUCGa- -3'
miRNA:   3'- -UCAGa-GgUgCCGUGgCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 130811 0.68 0.738409
Target:  5'- --cCUCgGCGaGCuCCGCGagcGCGUCGUCc -3'
miRNA:   3'- ucaGAGgUGC-CGuGGCGC---UGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 130673 0.66 0.835056
Target:  5'- cGGUCUCgGCgGGCACCucguccggcucucGCGACG-CG-Cg -3'
miRNA:   3'- -UCAGAGgUG-CCGUGG-------------CGCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 130556 0.68 0.709514
Target:  5'- --cCUCCGCGGUcuGCUGCGGgG-CGUCc -3'
miRNA:   3'- ucaGAGGUGCCG--UGGCGCUgCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 130278 0.69 0.680058
Target:  5'- cGGg--CCACGGCucGCCGCuGGCGUaccCGUCg -3'
miRNA:   3'- -UCagaGGUGCCG--UGGCG-CUGCA---GCAG- -5'
21378 5' -58.4 NC_004812.1 + 129669 0.66 0.843028
Target:  5'- cGGcgCUgCGCGGCGaugacgcCCGCGGCGcCGUa -3'
miRNA:   3'- -UCa-GAgGUGCCGU-------GGCGCUGCaGCAg -5'
21378 5' -58.4 NC_004812.1 + 129619 0.69 0.650263
Target:  5'- cGUcCUCCcCGGCGCCGgCGGgGcccUCGUCg -3'
miRNA:   3'- uCA-GAGGuGCCGUGGC-GCUgC---AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 129547 0.81 0.145282
Target:  5'- --aCUCgGCGGCggcggcgGCCGCGGCGUCGUCg -3'
miRNA:   3'- ucaGAGgUGCCG-------UGGCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 128163 0.66 0.835861
Target:  5'- gGGUCg-CGCGGCGCUGCGuCGgCGcCu -3'
miRNA:   3'- -UCAGagGUGCCGUGGCGCuGCaGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.