miRNA: 3'- aACU--AUGa--CAGGUa------AGGgAGGGUCCG- -5'
miRNA: 3'- -AACua-UGACAGGUAAG-----GGAGGGU--CCG- -5'
miRNA: 3'- aACUAUGACaGGUA------------AGGG-----------AGGGUCCG- -5'
miRNA: 3'- -AACUAUGACAGGUAAGGGAGGGUCCG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2138 | 3' | -53.3 | NC_001362.1 | + | 6214 | 0.66 | 0.251307 |
|
Target: 5'- aUGAguUACcugGUCCAgcuuaagUCUgUUCCAGGCa -3' miRNA: 3'- aACU--AUGa--CAGGUa------AGGgAGGGUCCG- -5' |
|||||||
| 2138 | 3' | -53.3 | NC_001362.1 | + | 700 | 0.66 | 0.236311 |
|
Target: 5'- gUUGuggGCUGUCCGUUCgacauCCUUCCAguGGUc -3' miRNA: 3'- -AACua-UGACAGGUAAG-----GGAGGGU--CCG- -5' |
|||||||
| 2138 | 3' | -53.3 | NC_001362.1 | + | 5966 | 0.7 | 0.132656 |
|
Target: 5'- cUGAUAUUGcCCAUacugucucccgaUCCCcauuggucacuUCCCAGGUa -3' miRNA: 3'- aACUAUGACaGGUA------------AGGG-----------AGGGUCCG- -5' |
|||||||
| 2138 | 3' | -53.3 | NC_001362.1 | + | 1304 | 1.11 | 0.000062 |
|
Target: 5'- aUUGAUACUGUCCAUUCCCUCCCAGGCg -3' miRNA: 3'- -AACUAUGACAGGUAAGGGAGGGUCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home