Results 41 - 60 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21380 | 3' | -57.2 | NC_004812.1 | + | 81101 | 0.74 | 0.466105 |
Target: 5'- -cGUGGcGGUGCGGGcgGCGugGUGgGCCg -3' miRNA: 3'- acCACCaCCGCGCCU--UGCugCAC-UGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 156148 | 0.74 | 0.448059 |
Target: 5'- cGGacgcGG-GGCGCGGGACGcGCGgGACCg -3' miRNA: 3'- aCCa---CCaCCGCGCCUUGC-UGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 98495 | 0.74 | 0.439183 |
Target: 5'- gGGUGGggcGGCGCGGGGCGcCGgGuCCc -3' miRNA: 3'- aCCACCa--CCGCGCCUUGCuGCaCuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 69601 | 0.75 | 0.421736 |
Target: 5'- cGGcGGUGGCccGCGGGugGugGUGcguGCCc -3' miRNA: 3'- aCCaCCACCG--CGCCUugCugCAC---UGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 30430 | 0.76 | 0.356333 |
Target: 5'- aGGUcagGGCGCGGAGCGAgGgGGCCa -3' miRNA: 3'- aCCAccaCCGCGCCUUGCUgCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 106230 | 0.72 | 0.550458 |
Target: 5'- cGGUGGUgcacgcgcccccGGCGUcgGGGGCGcccuaccGCGUGGCCc -3' miRNA: 3'- aCCACCA------------CCGCG--CCUUGC-------UGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 81941 | 0.72 | 0.555355 |
Target: 5'- aGGUaGGcGGCGCGGcACGugGUccgcagggcguccccGACCa -3' miRNA: 3'- aCCA-CCaCCGCGCCuUGCugCA---------------CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 117621 | 0.71 | 0.6309 |
Target: 5'- aGGgggGGcGGCGCGGGccgccgggcGCGGCGgggucgcgGGCCg -3' miRNA: 3'- aCCa--CCaCCGCGCCU---------UGCUGCa-------CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 76894 | 0.71 | 0.6309 |
Target: 5'- cGGagGGUGGC-CaGGACGGCGggGGCCa -3' miRNA: 3'- aCCa-CCACCGcGcCUUGCUGCa-CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 137040 | 0.71 | 0.6309 |
Target: 5'- cGGaGGUGGC-CGGG--GugGUGGCCg -3' miRNA: 3'- aCCaCCACCGcGCCUugCugCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 100137 | 0.71 | 0.6309 |
Target: 5'- gGcGUGGcGGCGCGG-GCGGCGgGGCg -3' miRNA: 3'- aC-CACCaCCGCGCCuUGCUGCaCUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 130860 | 0.71 | 0.62089 |
Target: 5'- cGGcGGgGGCGCGGcGGCGuCGaUGACCc -3' miRNA: 3'- aCCaCCaCCGCGCC-UUGCuGC-ACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 42776 | 0.71 | 0.62089 |
Target: 5'- uUGGUGcUGGC-CGuGggUGACGUaGACCg -3' miRNA: 3'- -ACCACcACCGcGC-CuuGCUGCA-CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 122362 | 0.71 | 0.61089 |
Target: 5'- cGG-GGgccggGGCGCGGGgcGCGGCGgccccucgGGCCc -3' miRNA: 3'- aCCaCCa----CCGCGCCU--UGCUGCa-------CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 155419 | 0.71 | 0.61089 |
Target: 5'- gGcGUGGUGGCgGCGGcGACGGCGacGGCg -3' miRNA: 3'- aC-CACCACCG-CGCC-UUGCUGCa-CUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 106495 | 0.72 | 0.600904 |
Target: 5'- gUGGcUGG-GGCGCGGGuccGCGGCGcggGGCg -3' miRNA: 3'- -ACC-ACCaCCGCGCCU---UGCUGCa--CUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 25464 | 0.72 | 0.590941 |
Target: 5'- gUGGUGGUcGCGCGGGcacACGAgGaUGuCCa -3' miRNA: 3'- -ACCACCAcCGCGCCU---UGCUgC-ACuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 148948 | 0.72 | 0.571106 |
Target: 5'- cGGUGGUcggGGCGCGaGAGCGGguCGUcGGCg -3' miRNA: 3'- aCCACCA---CCGCGC-CUUGCU--GCA-CUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 71070 | 0.72 | 0.571106 |
Target: 5'- cGGUucgGGcGGCGCGGGGCGuuCGgcGACCg -3' miRNA: 3'- aCCA---CCaCCGCGCCUUGCu-GCa-CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 110352 | 0.72 | 0.560264 |
Target: 5'- cGG-GGUGGCGCGGGugauccaACaGGCGgugcugcugGACCg -3' miRNA: 3'- aCCaCCACCGCGCCU-------UG-CUGCa--------CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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