miRNA display CGI


Results 61 - 80 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 137804 0.67 0.81971
Target:  5'- gGCGGCgAGGgcgcCGCGGagcaggcccccUGGCC-CCGGGa -3'
miRNA:   3'- -UGUCGgUCUa---GCGCC-----------ACUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 139445 0.67 0.81971
Target:  5'- gACAGCC-GAUgG-GG-GAgCACCAGGg -3'
miRNA:   3'- -UGUCGGuCUAgCgCCaCUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91315 0.67 0.83632
Target:  5'- gGCA-CCuGGUCGCGGcgGGCCAgCAGc -3'
miRNA:   3'- -UGUcGGuCUAGCGCCa-CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 119492 0.67 0.844357
Target:  5'- cGCGGCggCAGGg-GCGGcguccgcgGGCCGCCGGGc -3'
miRNA:   3'- -UGUCG--GUCUagCGCCa-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 77164 0.67 0.844357
Target:  5'- gGCAGCCcGccCGCGGcGgcgccguccccGCCGCCGGGc -3'
miRNA:   3'- -UGUCGGuCuaGCGCCaC-----------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 123077 0.67 0.828101
Target:  5'- gACGGCgCAGGucUCGCGGggcggGGCCGgCGcGGa -3'
miRNA:   3'- -UGUCG-GUCU--AGCGCCa----CUGGUgGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 49408 0.67 0.83632
Target:  5'- gGCGGCCcg--CGCcGUGGCC-CCGGGc -3'
miRNA:   3'- -UGUCGGucuaGCGcCACUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 27564 0.67 0.83632
Target:  5'- cACGGCCAGcuuguguUCGCGGaUGAgcuCCACCu-- -3'
miRNA:   3'- -UGUCGGUCu------AGCGCC-ACU---GGUGGucc -5'
21380 5' -57.3 NC_004812.1 + 44402 0.67 0.83469
Target:  5'- -gGGCCAGGuUCGCGauaacgcgcacGugCGCCAGGa -3'
miRNA:   3'- ugUCGGUCU-AGCGCca---------CugGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30965 0.67 0.83141
Target:  5'- -gGGUCAGGUacgccgcgacguugGCGGUGaacgcaaaGCCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUAg-------------CGCCAC--------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 112372 0.67 0.828101
Target:  5'- cGCucuGCCGGAcUCGCGGcGGCCACa--- -3'
miRNA:   3'- -UGu--CGGUCU-AGCGCCaCUGGUGgucc -5'
21380 5' -57.3 NC_004812.1 + 61111 0.67 0.828101
Target:  5'- cCGGCCGGAcacgCGCGGgcguagacguACC-CCAGGg -3'
miRNA:   3'- uGUCGGUCUa---GCGCCac--------UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 32858 0.67 0.828101
Target:  5'- gGCGGCCAGcggCacccCGGaGGCCGCCAGa -3'
miRNA:   3'- -UGUCGGUCua-Gc---GCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 100380 0.67 0.844357
Target:  5'- cGCcGCCGGGgggCGCGa-GGCCACCGGc -3'
miRNA:   3'- -UGuCGGUCUa--GCGCcaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 101023 0.67 0.82727
Target:  5'- gGCAG-CGGAUCGCcucggGGUGcacgcggGCCAgCAGGg -3'
miRNA:   3'- -UGUCgGUCUAGCG-----CCAC-------UGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 27323 0.67 0.81971
Target:  5'- -gGGCCccGAUgGcCGG-GAUCACCAGGg -3'
miRNA:   3'- ugUCGGu-CUAgC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 56178 0.67 0.81971
Target:  5'- uACAGCCcGggCGUGGUGGCCuggaagacguCguGGg -3'
miRNA:   3'- -UGUCGGuCuaGCGCCACUGGu---------GguCC- -5'
21380 5' -57.3 NC_004812.1 + 114642 0.67 0.820557
Target:  5'- uGCAGCCGGccguucagCGCGGgcaccaucaagagcgGGCCgguGCCGGGc -3'
miRNA:   3'- -UGUCGGUCua------GCGCCa--------------CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 72007 0.67 0.81971
Target:  5'- cGCGGUCGucUCGCGGUcGCUcggggGCCGGGa -3'
miRNA:   3'- -UGUCGGUcuAGCGCCAcUGG-----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155759 0.67 0.81971
Target:  5'- cGCGGCCgcGGGgacacgCGCGG-GGCCcuCCGGGc -3'
miRNA:   3'- -UGUCGG--UCUa-----GCGCCaCUGGu-GGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.