miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 30165 0.67 0.828101
Target:  5'- cACAGCCGGGagcgCGCGGcgGGCUcggcgcgcGCgAGGg -3'
miRNA:   3'- -UGUCGGUCUa---GCGCCa-CUGG--------UGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 153978 0.67 0.828101
Target:  5'- gACGGCgCAGGucUCGCGGggcggGGCCGgCGcGGa -3'
miRNA:   3'- -UGUCG-GUCU--AGCGCCa----CUGGUgGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 70232 0.67 0.828101
Target:  5'- -uGGCCcGGUCGCaGUacagaaACCGCCGGGg -3'
miRNA:   3'- ugUCGGuCUAGCGcCAc-----UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 55536 0.67 0.844357
Target:  5'- --cGCCAcgcggCGCGccucacguacGUGGCCACCGGGg -3'
miRNA:   3'- uguCGGUcua--GCGC----------CACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 150393 0.67 0.844357
Target:  5'- cGCGGCggCAGGg-GCGGcguccgcgGGCCGCCGGGc -3'
miRNA:   3'- -UGUCG--GUCUagCGCCa-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 75272 0.67 0.844357
Target:  5'- -gGGCCuGcgCGCcGUGAUCACCgAGGc -3'
miRNA:   3'- ugUCGGuCuaGCGcCACUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 37395 0.67 0.844357
Target:  5'- uACAGgCaAGGgggggcCGCGGacACCACCAGGa -3'
miRNA:   3'- -UGUCgG-UCUa-----GCGCCacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 113761 0.67 0.843561
Target:  5'- cGCGGCCAGGUa---GUGGCCACCcuugugcGGGu -3'
miRNA:   3'- -UGUCGGUCUAgcgcCACUGGUGG-------UCC- -5'
21380 5' -57.3 NC_004812.1 + 68201 0.67 0.843561
Target:  5'- -gGGCUGGGccgUGCGGUcgaucaugauguuGACCAUCAGGa -3'
miRNA:   3'- ugUCGGUCUa--GCGCCA-------------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 89663 0.67 0.83632
Target:  5'- --cGCCgAGAUCGaGGUcGACCcCCGGGu -3'
miRNA:   3'- uguCGG-UCUAGCgCCA-CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 44213 0.67 0.83632
Target:  5'- gGCGGCgCGGAcgggcgaaCGCGuGUGGCCGCCGc- -3'
miRNA:   3'- -UGUCG-GUCUa-------GCGC-CACUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 44157 0.67 0.83632
Target:  5'- gACGGCCGGAgggCGCucGGgGGCCgaGCCGGu -3'
miRNA:   3'- -UGUCGGUCUa--GCG--CCaCUGG--UGGUCc -5'
21380 5' -57.3 NC_004812.1 + 132103 0.67 0.828101
Target:  5'- cGCAGCCcccgcggCGCGGgGGCCccccguCCAGGa -3'
miRNA:   3'- -UGUCGGucua---GCGCCaCUGGu-----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 51576 0.67 0.828101
Target:  5'- cGCAGCCGGAggCGcCGGgucagucgGcACCGCgGGGc -3'
miRNA:   3'- -UGUCGGUCUa-GC-GCCa-------C-UGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 86917 0.67 0.844357
Target:  5'- uCAGCCAGuagagCGCGGc--CC-CCAGGa -3'
miRNA:   3'- uGUCGGUCua---GCGCCacuGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 11514 0.67 0.835506
Target:  5'- cGCAGCugCAGGUUGaCGGUGuguccguACCACCcgAGGc -3'
miRNA:   3'- -UGUCG--GUCUAGC-GCCAC-------UGGUGG--UCC- -5'
21380 5' -57.3 NC_004812.1 + 128603 0.67 0.835506
Target:  5'- gGCAGCuCGGGUcagccccCGCGGUacGCC-CCGGGg -3'
miRNA:   3'- -UGUCG-GUCUA-------GCGCCAc-UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91315 0.67 0.83632
Target:  5'- gGCA-CCuGGUCGCGGcgGGCCAgCAGc -3'
miRNA:   3'- -UGUcGGuCUAGCGCCa-CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 112626 0.68 0.747291
Target:  5'- cCGGCCGG-UCG-GGcGACCGCgGGGa -3'
miRNA:   3'- uGUCGGUCuAGCgCCaCUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 63538 0.68 0.756779
Target:  5'- -gAGCUccaGGGUCGUGGguccGGCCGgCAGGg -3'
miRNA:   3'- ugUCGG---UCUAGCGCCa---CUGGUgGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.