miRNA display CGI


Results 121 - 140 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 155626 0.68 0.793572
Target:  5'- -aGGCCuagugaAGAUCGgGGgcgGGCaCGCCGGGc -3'
miRNA:   3'- ugUCGG------UCUAGCgCCa--CUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 124503 0.68 0.784565
Target:  5'- --cGCCAGggCGCcaUGGCCcACCAGGc -3'
miRNA:   3'- uguCGGUCuaGCGccACUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 38525 0.68 0.784565
Target:  5'- --cGCCGGAgacgCGCGGcGGCCGgggUCGGGg -3'
miRNA:   3'- uguCGGUCUa---GCGCCaCUGGU---GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 16758 0.68 0.790884
Target:  5'- uCAGUCGGGgggCGCGGgGGCCGgagggugagggggcCCAGGu -3'
miRNA:   3'- uGUCGGUCUa--GCGCCaCUGGU--------------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 95164 0.68 0.784565
Target:  5'- cCGGCCGGucUCgGCGGgcccucaGACgGCCGGGg -3'
miRNA:   3'- uGUCGGUCu-AG-CGCCa------CUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 93840 0.68 0.793572
Target:  5'- cGCGGCCauccgcucgcagAGGUCGCGGgggGcccggcagcccaGCCGCCGGu -3'
miRNA:   3'- -UGUCGG------------UCUAGCGCCa--C------------UGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 105199 0.68 0.793572
Target:  5'- -gAGCgCGGggCGCGGgcgcgGGCC-CCGGGc -3'
miRNA:   3'- ugUCG-GUCuaGCGCCa----CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30117 0.68 0.793572
Target:  5'- -aGGCCuagugaAGAUCGgGGgcgGGCaCGCCGGGc -3'
miRNA:   3'- ugUCGG------UCUAGCgCCa--CUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 141783 0.68 0.747291
Target:  5'- aACGGCCg---CGCGGgggggcgGGCCGCgCGGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCCa------CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 100894 0.68 0.747291
Target:  5'- cGCGGCCcccgaggcGGggCGCGGagacGGCCGCgAGGa -3'
miRNA:   3'- -UGUCGG--------UCuaGCGCCa---CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 39140 0.68 0.756779
Target:  5'- gGCGGCCGGGcCGgGGguccGCCcCCGGGg -3'
miRNA:   3'- -UGUCGGUCUaGCgCCac--UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91779 0.68 0.775425
Target:  5'- gGCGGCCAugcGGUCGCccaUGGCCGUCAGGc -3'
miRNA:   3'- -UGUCGGU---CUAGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 20160 0.68 0.747291
Target:  5'- --cGCgCGGAUucgccUGCGGUG-CCGCCGGGc -3'
miRNA:   3'- uguCG-GUCUA-----GCGCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153180 0.68 0.775425
Target:  5'- gGCGGCUGGcgC-CGcGUG-CCGCCGGGg -3'
miRNA:   3'- -UGUCGGUCuaGcGC-CACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 129482 0.68 0.784565
Target:  5'- gGCGGCCAGGUCGCcgccGUaGCCcucgGCCAGc -3'
miRNA:   3'- -UGUCGGUCUAGCGc---CAcUGG----UGGUCc -5'
21380 5' -57.3 NC_004812.1 + 85699 0.68 0.784565
Target:  5'- gGCGGCCAGAccUGCGGgGGCgGCCcacuGGc -3'
miRNA:   3'- -UGUCGGUCUa-GCGCCaCUGgUGGu---CC- -5'
21380 5' -57.3 NC_004812.1 + 7624 0.68 0.784565
Target:  5'- --cGCCGGAgacgCGCGGcGGCCGgggUCGGGg -3'
miRNA:   3'- uguCGGUCUa---GCGCCaCUGGU---GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 112626 0.68 0.747291
Target:  5'- cCGGCCGG-UCG-GGcGACCGCgGGGa -3'
miRNA:   3'- uGUCGGUCuAGCgCCaCUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 44266 0.68 0.784565
Target:  5'- gAUAGCCGcuGGUCGCGcGcGACCGCCu-- -3'
miRNA:   3'- -UGUCGGU--CUAGCGC-CaCUGGUGGucc -5'
21380 5' -57.3 NC_004812.1 + 137046 0.68 0.793572
Target:  5'- -uGGCCGGG--GUGGUGGCCgGCCuGGg -3'
miRNA:   3'- ugUCGGUCUagCGCCACUGG-UGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.