miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 114662 0.7 0.647448
Target:  5'- uGCGGCCcgccaccGGGUCGCGGUccaggGGCgGCCGcGGg -3'
miRNA:   3'- -UGUCGG-------UCUAGCGCCA-----CUGgUGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 53041 0.7 0.648457
Target:  5'- uGCGcGCCAGcaCGCGGcagcUGcACCGCCAGGc -3'
miRNA:   3'- -UGU-CGGUCuaGCGCC----AC-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 100074 0.7 0.648457
Target:  5'- -gAGUguGAUCGgGGgccgGGCCGCCGGa -3'
miRNA:   3'- ugUCGguCUAGCgCCa---CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 34732 0.7 0.648457
Target:  5'- gGCAGCCGccGAUCGCcguccuggGGcGGCC-CCGGGg -3'
miRNA:   3'- -UGUCGGU--CUAGCG--------CCaCUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 94318 0.7 0.648457
Target:  5'- --cGCCGGcugcgCgGCGGUGACCGCguGGg -3'
miRNA:   3'- uguCGGUCua---G-CGCCACUGGUGguCC- -5'
21380 5' -57.3 NC_004812.1 + 56704 0.7 0.657527
Target:  5'- cCAGCCGGAUCGgcUGGUGGuacggacagggccUCGCCAGa -3'
miRNA:   3'- uGUCGGUCUAGC--GCCACU-------------GGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 20038 0.7 0.658534
Target:  5'- gGCGGCgAGcGUCcCGGUaGGCCAUCAGGc -3'
miRNA:   3'- -UGUCGgUC-UAGcGCCA-CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 62139 0.7 0.658534
Target:  5'- -aGGCCGGAUCgGCGGcgcgggcGGCCuCCGGGu -3'
miRNA:   3'- ugUCGGUCUAG-CGCCa------CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122321 0.7 0.658534
Target:  5'- --cGCguGGUgCGCguggggGGUGGCCGCCAGGu -3'
miRNA:   3'- uguCGguCUA-GCG------CCACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 68953 0.7 0.667586
Target:  5'- gAUGGCCgcgagggucgaguGGGUCGUGGUGGucugcggguUCACCAGGu -3'
miRNA:   3'- -UGUCGG-------------UCUAGCGCCACU---------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 101203 0.7 0.668591
Target:  5'- -gGGCCAGGggcccCGCGGccGCCAgCAGGg -3'
miRNA:   3'- ugUCGGUCUa----GCGCCacUGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 3891 0.7 0.668591
Target:  5'- cGCAGCCAGAggCGCGGgcgcGGCgGCgCGGcGg -3'
miRNA:   3'- -UGUCGGUCUa-GCGCCa---CUGgUG-GUC-C- -5'
21380 5' -57.3 NC_004812.1 + 139113 0.7 0.668591
Target:  5'- cGCGGCUGGGgccggCGCGGaagagGGCCGUCAGGa -3'
miRNA:   3'- -UGUCGGUCUa----GCGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 57676 0.7 0.668591
Target:  5'- cACcuCCGGGcCGCGGUcGAgCGCCAGGa -3'
miRNA:   3'- -UGucGGUCUaGCGCCA-CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 129399 0.7 0.668591
Target:  5'- cGCAGCCAGAggCGCGGgcgcGGCgGCgCGGcGg -3'
miRNA:   3'- -UGUCGGUCUa-GCGCCa---CUGgUG-GUC-C- -5'
21380 5' -57.3 NC_004812.1 + 72861 0.7 0.668591
Target:  5'- uCAGCgCGGAcagCGCGGgcagcugcGCCGCCAGGc -3'
miRNA:   3'- uGUCG-GUCUa--GCGCCac------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 22931 0.7 0.678619
Target:  5'- --cGUgGGGUCGCGGUGagucccucGCCGCuCGGGg -3'
miRNA:   3'- uguCGgUCUAGCGCCAC--------UGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 6842 0.7 0.678619
Target:  5'- gGCGGCCc--UCGCGGUcggcgaggcGGCCcGCCGGGg -3'
miRNA:   3'- -UGUCGGucuAGCGCCA---------CUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 37743 0.7 0.678619
Target:  5'- gGCGGCCc--UCGCGGUcggcgaggcGGCCcGCCGGGg -3'
miRNA:   3'- -UGUCGGucuAGCGCCA---------CUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 78941 0.7 0.678619
Target:  5'- cCGGCUgGGGUCGgGG-GugCGCCGGGg -3'
miRNA:   3'- uGUCGG-UCUAGCgCCaCugGUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.