miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 103802 0.69 0.688609
Target:  5'- cCAGCUGGGUCGCGccgacGUGACCACgguCAGc -3'
miRNA:   3'- uGUCGGUCUAGCGC-----CACUGGUG---GUCc -5'
21380 5' -57.3 NC_004812.1 + 101473 0.69 0.692593
Target:  5'- cCAGCUccuggcccuggcgcaGGGUCcgGCGGUagaaGACCGCCGGGu -3'
miRNA:   3'- uGUCGG---------------UCUAG--CGCCA----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 103928 0.69 0.697562
Target:  5'- -aAGcCCAGGUCcucgagcagGCGGUuauagagGGCCGCCGGGg -3'
miRNA:   3'- ugUC-GGUCUAG---------CGCCA-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 24670 0.69 0.698554
Target:  5'- uGCAGCagCAGGUCGCGGcacggGAucCCGCgAGGc -3'
miRNA:   3'- -UGUCG--GUCUAGCGCCa----CU--GGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 75888 0.69 0.698554
Target:  5'- -gGGCCAgGGUCGCGGUcuuggcguucGCCGCgAGGg -3'
miRNA:   3'- ugUCGGU-CUAGCGCCAc---------UGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 83733 0.69 0.698554
Target:  5'- --uGCCGGGgaCGCGGgcccgGcuGCCGCCAGGg -3'
miRNA:   3'- uguCGGUCUa-GCGCCa----C--UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 100775 0.69 0.698554
Target:  5'- cGCAGUCGccGAUCguGCGGUGGCgGCCucGGg -3'
miRNA:   3'- -UGUCGGU--CUAG--CGCCACUGgUGGu-CC- -5'
21380 5' -57.3 NC_004812.1 + 148439 0.69 0.698554
Target:  5'- --cGUgGGGUCGCGGUGAgucccucgcCCGCuCGGGg -3'
miRNA:   3'- uguCGgUCUAGCGCCACU---------GGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 13504 0.69 0.698554
Target:  5'- --cGCCAGG-CGCGGggcccacggcgUGACgGCCGGGu -3'
miRNA:   3'- uguCGGUCUaGCGCC-----------ACUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 94503 0.69 0.705484
Target:  5'- -gGGCCAGcgCGCGGUucugguggacggggGACC-UCGGGg -3'
miRNA:   3'- ugUCGGUCuaGCGCCA--------------CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 80361 0.69 0.708445
Target:  5'- cACAGCCGGGcccgUGUGGUGuuuCCGCCGc- -3'
miRNA:   3'- -UGUCGGUCUa---GCGCCACu--GGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 13417 0.69 0.708445
Target:  5'- gACGGCCGGA--GgGGUGGCCGucguuUCGGGg -3'
miRNA:   3'- -UGUCGGUCUagCgCCACUGGU-----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 3939 0.69 0.718273
Target:  5'- gGCGGCaCGGcgCGCGc-GGCCGCCAGc -3'
miRNA:   3'- -UGUCG-GUCuaGCGCcaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 129447 0.69 0.718273
Target:  5'- gGCGGCaCGGcgCGCGc-GGCCGCCAGc -3'
miRNA:   3'- -UGUCG-GUCuaGCGCcaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 78978 0.69 0.718273
Target:  5'- --cGCCggGGGUCGgGG-GugCGCCGGGg -3'
miRNA:   3'- uguCGG--UCUAGCgCCaCugGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58975 0.69 0.728029
Target:  5'- uGCGGgCGGGggUCGCGGgucgGGuuACCGGGg -3'
miRNA:   3'- -UGUCgGUCU--AGCGCCa---CUggUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 37532 0.69 0.728029
Target:  5'- gGCGGCCGucGUUGCGGUGAaaguCCGCCGu- -3'
miRNA:   3'- -UGUCGGUc-UAGCGCCACU----GGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 98069 0.69 0.728029
Target:  5'- gGCGGCCGGAgC-CGGgccccgGGCUAUCGGGg -3'
miRNA:   3'- -UGUCGGUCUaGcGCCa-----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 47467 0.69 0.728029
Target:  5'- gACGGCCGGuccGUCGCc---GCCGCCGGGu -3'
miRNA:   3'- -UGUCGGUC---UAGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 97937 0.69 0.736741
Target:  5'- gGCGGCCAGGuUCGCc-UGGCCGgugggguCCAGGg -3'
miRNA:   3'- -UGUCGGUCU-AGCGccACUGGU-------GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.