miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 97937 0.69 0.736741
Target:  5'- gGCGGCCAGGuUCGCc-UGGCCGgugggguCCAGGg -3'
miRNA:   3'- -UGUCGGUCU-AGCGccACUGGU-------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 87068 0.69 0.737705
Target:  5'- cGCGGgCAGGggCGCGGgggGGCgGCCGGa -3'
miRNA:   3'- -UGUCgGUCUa-GCGCCa--CUGgUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 2735 0.69 0.737705
Target:  5'- cGCGGCgCAGGUCGCGcGcggcgGGCCAgCGGa -3'
miRNA:   3'- -UGUCG-GUCUAGCGC-Ca----CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 94161 0.69 0.737705
Target:  5'- -gGGCCAGAagGCGucuUGGCCAaaguCCAGGa -3'
miRNA:   3'- ugUCGGUCUagCGCc--ACUGGU----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 133531 0.69 0.737705
Target:  5'- aGCAGC---GUCGCgugGGUGGCCACCAugcGGg -3'
miRNA:   3'- -UGUCGgucUAGCG---CCACUGGUGGU---CC- -5'
21380 5' -57.3 NC_004812.1 + 128243 0.69 0.737705
Target:  5'- cGCGGCgCAGGUCGCGcGcggcgGGCCAgCGGa -3'
miRNA:   3'- -UGUCG-GUCUAGCGC-Ca----CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 59392 0.69 0.737705
Target:  5'- -uGGCCAGcgaCGUGG-GcACCGCCGGGu -3'
miRNA:   3'- ugUCGGUCua-GCGCCaC-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 32998 0.69 0.737705
Target:  5'- cCGGCCGGcguUCGCGG--GCgACCGGGc -3'
miRNA:   3'- uGUCGGUCu--AGCGCCacUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 112626 0.68 0.747291
Target:  5'- cCGGCCGG-UCG-GGcGACCGCgGGGa -3'
miRNA:   3'- uGUCGGUCuAGCgCCaCUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 100894 0.68 0.747291
Target:  5'- cGCGGCCcccgaggcGGggCGCGGagacGGCCGCgAGGa -3'
miRNA:   3'- -UGUCGG--------UCuaGCGCCa---CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 20160 0.68 0.747291
Target:  5'- --cGCgCGGAUucgccUGCGGUG-CCGCCGGGc -3'
miRNA:   3'- uguCG-GUCUA-----GCGCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 141783 0.68 0.747291
Target:  5'- aACGGCCg---CGCGGgggggcgGGCCGCgCGGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCCa------CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 63538 0.68 0.756779
Target:  5'- -gAGCUccaGGGUCGUGGguccGGCCGgCAGGg -3'
miRNA:   3'- ugUCGG---UCUAGCGCCa---CUGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 39140 0.68 0.756779
Target:  5'- gGCGGCCGGGcCGgGGguccGCCcCCGGGg -3'
miRNA:   3'- -UGUCGGUCUaGCgCCac--UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 148512 0.68 0.756779
Target:  5'- -gGGCCGGGggaggggggGCGGcgcgGGCCGCCGGGn -3'
miRNA:   3'- ugUCGGUCUag-------CGCCa---CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 117611 0.68 0.756779
Target:  5'- -gGGCCGGGggaggggggGCGGcgcgGGCCGCCGGGn -3'
miRNA:   3'- ugUCGGUCUag-------CGCCa---CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 8239 0.68 0.756779
Target:  5'- gGCGGCCGGGcCGgGGguccGCCcCCGGGg -3'
miRNA:   3'- -UGUCGGUCUaGCgCCac--UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 97149 0.68 0.756779
Target:  5'- cGCGGUCg---CGUGGuUGAUCGCCGGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCC-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 25457 0.68 0.756779
Target:  5'- gGCAGCCGugguGGUCGCGcG-GGCaCACgAGGa -3'
miRNA:   3'- -UGUCGGU----CUAGCGC-CaCUG-GUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 58929 0.68 0.756779
Target:  5'- -aAGCCGGucUCgGCGGgGGCCGCCuGGc -3'
miRNA:   3'- ugUCGGUCu-AG-CGCCaCUGGUGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.