miRNA display CGI


Results 121 - 140 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 51565 0.68 0.765227
Target:  5'- cGCGGCCGGAgcggcgccucccaUCGCGGaGGCCggagagACCgAGGc -3'
miRNA:   3'- -UGUCGGUCU-------------AGCGCCaCUGG------UGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 54626 0.68 0.76616
Target:  5'- -gGGCCGGAgaggccCGCGGgcucACCACgGGGg -3'
miRNA:   3'- ugUCGGUCUa-----GCGCCac--UGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 31000 0.68 0.76616
Target:  5'- -gGGCCGGGgcgcgCGCGG-GGCCGggagcccgcCCGGGa -3'
miRNA:   3'- ugUCGGUCUa----GCGCCaCUGGU---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58776 0.68 0.76616
Target:  5'- gGCgAGCgAGggCGCGGUGGgCuuuCCGGGc -3'
miRNA:   3'- -UG-UCGgUCuaGCGCCACUgGu--GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 18290 0.68 0.76616
Target:  5'- -gGGCCAGGcCGCGGcgggaguagGACCGCgaCAGGu -3'
miRNA:   3'- ugUCGGUCUaGCGCCa--------CUGGUG--GUCC- -5'
21380 5' -57.3 NC_004812.1 + 37193 0.68 0.76616
Target:  5'- cACGGCCAGGgggaGCGGcGcCC-CCGGGc -3'
miRNA:   3'- -UGUCGGUCUag--CGCCaCuGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 67079 0.68 0.76616
Target:  5'- cGCcGCCAG---GCGGUcGACCACCGGc -3'
miRNA:   3'- -UGuCGGUCuagCGCCA-CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 99 0.68 0.76616
Target:  5'- -gGGCCGGGgcgcgCGCGG-GGCCGggagcccgcCCGGGa -3'
miRNA:   3'- ugUCGGUCUa----GCGCCaCUGGU---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 156509 0.68 0.76616
Target:  5'- -gGGCCGGGgcgcgCGCGG-GGCCGggagcccgcCCGGGa -3'
miRNA:   3'- ugUCGGUCUa----GCGCCaCUGGU---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 6292 0.68 0.76616
Target:  5'- cACGGCCAGGgggaGCGGcGcCC-CCGGGc -3'
miRNA:   3'- -UGUCGGUCUag--CGCCaCuGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 88761 0.68 0.76616
Target:  5'- aACAGCCAGuucAUCGCGcUGAugcCCACCGu- -3'
miRNA:   3'- -UGUCGGUC---UAGCGCcACU---GGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 107583 0.68 0.76988
Target:  5'- gGCGGCgCGGuugaccucguccgCGUGGgcccGGCCGCCGGGg -3'
miRNA:   3'- -UGUCG-GUCua-----------GCGCCa---CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 25706 0.68 0.774504
Target:  5'- cUAGCCgcAGGUCGUGGuUGuucaucaGCCACUGGGg -3'
miRNA:   3'- uGUCGG--UCUAGCGCC-AC-------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91779 0.68 0.775425
Target:  5'- gGCGGCCAugcGGUCGCccaUGGCCGUCAGGc -3'
miRNA:   3'- -UGUCGGU---CUAGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 98679 0.68 0.775425
Target:  5'- -gAGCCGGGgcgggCGCGGUcGAaccgccgCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUa----GCGCCA-CUg------GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 16222 0.68 0.775425
Target:  5'- cGCGcGCCGGAg-GCGGagccGGCCgGCCAGGa -3'
miRNA:   3'- -UGU-CGGUCUagCGCCa---CUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 27672 0.68 0.775425
Target:  5'- gGCGGCUGGcgC-CGcGUG-CCGCCGGGg -3'
miRNA:   3'- -UGUCGGUCuaGcGC-CACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91984 0.68 0.775425
Target:  5'- cGCGGCCGauGGUUGUgacGGUGGCCGCgacgugcaggCAGGg -3'
miRNA:   3'- -UGUCGGU--CUAGCG---CCACUGGUG----------GUCC- -5'
21380 5' -57.3 NC_004812.1 + 153180 0.68 0.775425
Target:  5'- gGCGGCUGGcgC-CGcGUG-CCGCCGGGg -3'
miRNA:   3'- -UGUCGGUCuaGcGC-CACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 7624 0.68 0.784565
Target:  5'- --cGCCGGAgacgCGCGGcGGCCGgggUCGGGg -3'
miRNA:   3'- uguCGGUCUa---GCGCCaCUGGU---GGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.