miRNA display CGI


Results 141 - 160 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 124503 0.68 0.784565
Target:  5'- --cGCCAGggCGCcaUGGCCcACCAGGc -3'
miRNA:   3'- uguCGGUCuaGCGccACUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 38525 0.68 0.784565
Target:  5'- --cGCCGGAgacgCGCGGcGGCCGgggUCGGGg -3'
miRNA:   3'- uguCGGUCUa---GCGCCaCUGGU---GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 7624 0.68 0.784565
Target:  5'- --cGCCGGAgacgCGCGGcGGCCGgggUCGGGg -3'
miRNA:   3'- uguCGGUCUa---GCGCCaCUGGU---GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 129482 0.68 0.784565
Target:  5'- gGCGGCCAGGUCGCcgccGUaGCCcucgGCCAGc -3'
miRNA:   3'- -UGUCGGUCUAGCGc---CAcUGG----UGGUCc -5'
21380 5' -57.3 NC_004812.1 + 44266 0.68 0.784565
Target:  5'- gAUAGCCGcuGGUCGCGcGcGACCGCCu-- -3'
miRNA:   3'- -UGUCGGU--CUAGCGC-CaCUGGUGGucc -5'
21380 5' -57.3 NC_004812.1 + 85699 0.68 0.784565
Target:  5'- gGCGGCCAGAccUGCGGgGGCgGCCcacuGGc -3'
miRNA:   3'- -UGUCGGUCUa-GCGCCaCUGgUGGu---CC- -5'
21380 5' -57.3 NC_004812.1 + 16758 0.68 0.790884
Target:  5'- uCAGUCGGGgggCGCGGgGGCCGgagggugagggggcCCAGGu -3'
miRNA:   3'- uGUCGGUCUa--GCGCCaCUGGU--------------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30117 0.68 0.793572
Target:  5'- -aGGCCuagugaAGAUCGgGGgcgGGCaCGCCGGGc -3'
miRNA:   3'- ugUCGG------UCUAGCgCCa--CUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 65485 0.68 0.793572
Target:  5'- -gGGCCgAGcgCGCGcG-GACCACgGGGg -3'
miRNA:   3'- ugUCGG-UCuaGCGC-CaCUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 93840 0.68 0.793572
Target:  5'- cGCGGCCauccgcucgcagAGGUCGCGGgggGcccggcagcccaGCCGCCGGu -3'
miRNA:   3'- -UGUCGG------------UCUAGCGCCa--C------------UGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 137046 0.68 0.793572
Target:  5'- -uGGCCGGG--GUGGUGGCCgGCCuGGg -3'
miRNA:   3'- ugUCGGUCUagCGCCACUGG-UGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 105199 0.68 0.793572
Target:  5'- -gAGCgCGGggCGCGGgcgcgGGCC-CCGGGc -3'
miRNA:   3'- ugUCG-GUCuaGCGCCa----CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 93727 0.68 0.793572
Target:  5'- -gAGCCGGGcucCGCGGcagacggGGCCGCCGcGGa -3'
miRNA:   3'- ugUCGGUCUa--GCGCCa------CUGGUGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 155626 0.68 0.793572
Target:  5'- -aGGCCuagugaAGAUCGgGGgcgGGCaCGCCGGGc -3'
miRNA:   3'- ugUCGG------UCUAGCgCCa--CUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 133438 0.67 0.798909
Target:  5'- uGCAGCacguacaCGGUGugCGCCAGGg -3'
miRNA:   3'- -UGUCGgucuagcGCCACugGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153357 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122456 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 142617 0.67 0.801557
Target:  5'- uCAGCCucgugucGGAcUCGCuccUGGCCGCCGGGg -3'
miRNA:   3'- uGUCGG-------UCU-AGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 74104 0.67 0.802437
Target:  5'- aGCAGCgCcccgAGcUUGuCGGUGACgGCCGGGa -3'
miRNA:   3'- -UGUCG-G----UCuAGC-GCCACUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58349 0.67 0.802437
Target:  5'- cCA-CCAGcgCGCGGgucccGGCCuCCAGGg -3'
miRNA:   3'- uGUcGGUCuaGCGCCa----CUGGuGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.