miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 23667 0.67 0.828101
Target:  5'- -uGGCCuucuUCGCccuGGUGAUgGCCGGGg -3'
miRNA:   3'- ugUCGGucu-AGCG---CCACUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 61111 0.67 0.828101
Target:  5'- cCGGCCGGAcacgCGCGGgcguagacguACC-CCAGGg -3'
miRNA:   3'- uGUCGGUCUa---GCGCCac--------UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 112372 0.67 0.828101
Target:  5'- cGCucuGCCGGAcUCGCGGcGGCCACa--- -3'
miRNA:   3'- -UGu--CGGUCU-AGCGCCaCUGGUGgucc -5'
21380 5' -57.3 NC_004812.1 + 30165 0.67 0.828101
Target:  5'- cACAGCCGGGagcgCGCGGcgGGCUcggcgcgcGCgAGGg -3'
miRNA:   3'- -UGUCGGUCUa---GCGCCa-CUGG--------UGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 49733 0.67 0.828101
Target:  5'- gACGGCCgacgGGGUCGgGGUcGCgGCgGGGg -3'
miRNA:   3'- -UGUCGG----UCUAGCgCCAcUGgUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 153978 0.67 0.828101
Target:  5'- gACGGCgCAGGucUCGCGGggcggGGCCGgCGcGGa -3'
miRNA:   3'- -UGUCG-GUCU--AGCGCCa----CUGGUgGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 70232 0.67 0.828101
Target:  5'- -uGGCCcGGUCGCaGUacagaaACCGCCGGGg -3'
miRNA:   3'- ugUCGGuCUAGCGcCAc-----UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 132103 0.67 0.828101
Target:  5'- cGCAGCCcccgcggCGCGGgGGCCccccguCCAGGa -3'
miRNA:   3'- -UGUCGGucua---GCGCCaCUGGu-----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 51576 0.67 0.828101
Target:  5'- cGCAGCCGGAggCGcCGGgucagucgGcACCGCgGGGc -3'
miRNA:   3'- -UGUCGGUCUa-GC-GCCa-------C-UGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 32858 0.67 0.828101
Target:  5'- gGCGGCCAGcggCacccCGGaGGCCGCCAGa -3'
miRNA:   3'- -UGUCGGUCua-Gc---GCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 123077 0.67 0.828101
Target:  5'- gACGGCgCAGGucUCGCGGggcggGGCCGgCGcGGa -3'
miRNA:   3'- -UGUCG-GUCU--AGCGCCa----CUGGUgGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 101023 0.67 0.82727
Target:  5'- gGCAG-CGGAUCGCcucggGGUGcacgcggGCCAgCAGGg -3'
miRNA:   3'- -UGUCgGUCUAGCG-----CCAC-------UGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 139745 0.67 0.82727
Target:  5'- cGCcGaCCAGGUCGCGGUcccccgcGACCGCgcgccuaAGGg -3'
miRNA:   3'- -UGuC-GGUCUAGCGCCA-------CUGGUGg------UCC- -5'
21380 5' -57.3 NC_004812.1 + 114642 0.67 0.820557
Target:  5'- uGCAGCCGGccguucagCGCGGgcaccaucaagagcgGGCCgguGCCGGGc -3'
miRNA:   3'- -UGUCGGUCua------GCGCCa--------------CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30251 0.67 0.81971
Target:  5'- cGCGGCCgcGGGgacacgCGCGG-GGCCcuCCGGGc -3'
miRNA:   3'- -UGUCGG--UCUa-----GCGCCaCUGGu-GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 82334 0.67 0.81971
Target:  5'- -gAGCCGGAccCGCGGacgGugCgcgGCCGGGg -3'
miRNA:   3'- ugUCGGUCUa-GCGCCa--CugG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 27323 0.67 0.81971
Target:  5'- -gGGCCccGAUgGcCGG-GAUCACCAGGg -3'
miRNA:   3'- ugUCGGu-CUAgC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 126326 0.67 0.81971
Target:  5'- cCGGCCGGGaaGCGGUGuCCgacGCCcGGa -3'
miRNA:   3'- uGUCGGUCUagCGCCACuGG---UGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 155759 0.67 0.81971
Target:  5'- cGCGGCCgcGGGgacacgCGCGG-GGCCcuCCGGGc -3'
miRNA:   3'- -UGUCGG--UCUa-----GCGCCaCUGGu-GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 72007 0.67 0.81971
Target:  5'- cGCGGUCGucUCGCGGUcGCUcggggGCCGGGa -3'
miRNA:   3'- -UGUCGGUcuAGCGCCAcUGG-----UGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.