miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 126326 0.67 0.81971
Target:  5'- cCGGCCGGGaaGCGGUGuCCgacGCCcGGa -3'
miRNA:   3'- uGUCGGUCUagCGCCACuGG---UGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 72007 0.67 0.81971
Target:  5'- cGCGGUCGucUCGCGGUcGCUcggggGCCGGGa -3'
miRNA:   3'- -UGUCGGUcuAGCGCCAcUGG-----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155759 0.67 0.81971
Target:  5'- cGCGGCCgcGGGgacacgCGCGG-GGCCcuCCGGGc -3'
miRNA:   3'- -UGUCGG--UCUa-----GCGCCaCUGGu-GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 27323 0.67 0.81971
Target:  5'- -gGGCCccGAUgGcCGG-GAUCACCAGGg -3'
miRNA:   3'- ugUCGGu-CUAgC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 56178 0.67 0.81971
Target:  5'- uACAGCCcGggCGUGGUGGCCuggaagacguCguGGg -3'
miRNA:   3'- -UGUCGGuCuaGCGCCACUGGu---------GguCC- -5'
21380 5' -57.3 NC_004812.1 + 58401 0.67 0.814595
Target:  5'- gGCGGCCgccgccuggaggcugGGGggGCGGcggGACCcgGCCAGGa -3'
miRNA:   3'- -UGUCGG---------------UCUagCGCCa--CUGG--UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 71719 0.67 0.811153
Target:  5'- -gGGCCGGGaagUCGCucgGGUGGCggaggGCCAGGa -3'
miRNA:   3'- ugUCGGUCU---AGCG---CCACUGg----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 18999 0.67 0.811153
Target:  5'- aGCAGCCGGAggccCGCGGccgcgGGCCggcgcaGCgCGGGc -3'
miRNA:   3'- -UGUCGGUCUa---GCGCCa----CUGG------UG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 38373 0.67 0.811153
Target:  5'- uGCAGgCGGGcgGCGG-GGCCcGCCGGGa -3'
miRNA:   3'- -UGUCgGUCUagCGCCaCUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30430 0.67 0.811153
Target:  5'- -aGGUCAGggCGCGGagcgagggGGCCAgCGGGu -3'
miRNA:   3'- ugUCGGUCuaGCGCCa-------CUGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70900 0.67 0.809422
Target:  5'- uGCGGCCAGugggccgccccCGCaGGUcuGGCCGCCAGc -3'
miRNA:   3'- -UGUCGGUCua---------GCG-CCA--CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 11157 0.67 0.802437
Target:  5'- uCGGCCAGG-CGaauguagguCGGUG-CCAUCAGGu -3'
miRNA:   3'- uGUCGGUCUaGC---------GCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 74104 0.67 0.802437
Target:  5'- aGCAGCgCcccgAGcUUGuCGGUGACgGCCGGGa -3'
miRNA:   3'- -UGUCG-G----UCuAGC-GCCACUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58349 0.67 0.802437
Target:  5'- cCA-CCAGcgCGCGGgucccGGCCuCCAGGg -3'
miRNA:   3'- uGUcGGUCuaGCGCCa----CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153357 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 142617 0.67 0.801557
Target:  5'- uCAGCCucgugucGGAcUCGCuccUGGCCGCCGGGg -3'
miRNA:   3'- uGUCGG-------UCU-AGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122456 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 133438 0.67 0.798909
Target:  5'- uGCAGCacguacaCGGUGugCGCCAGGg -3'
miRNA:   3'- -UGUCGgucuagcGCCACugGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30117 0.68 0.793572
Target:  5'- -aGGCCuagugaAGAUCGgGGgcgGGCaCGCCGGGc -3'
miRNA:   3'- ugUCGG------UCUAGCgCCa--CUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 155626 0.68 0.793572
Target:  5'- -aGGCCuagugaAGAUCGgGGgcgGGCaCGCCGGGc -3'
miRNA:   3'- ugUCGG------UCUAGCgCCa--CUG-GUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.