miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 46886 0.66 0.852207
Target:  5'- cGCAGCCccagcgccccGGGgcgggCGCGGcGGCCGCCGc- -3'
miRNA:   3'- -UGUCGG----------UCUa----GCGCCaCUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 47467 0.69 0.728029
Target:  5'- gACGGCCGGuccGUCGCc---GCCGCCGGGu -3'
miRNA:   3'- -UGUCGGUC---UAGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 47497 0.66 0.881608
Target:  5'- -gGGUCucGGGUCGUcacggcgcggaGGUGGCCgGCCAGGc -3'
miRNA:   3'- ugUCGG--UCUAGCG-----------CCACUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 47606 0.66 0.880217
Target:  5'- gGCAGCCGcGGUCGUGGgcgauaaacuCCuuCAGGg -3'
miRNA:   3'- -UGUCGGU-CUAGCGCCacu-------GGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 49408 0.67 0.83632
Target:  5'- gGCGGCCcg--CGCcGUGGCC-CCGGGc -3'
miRNA:   3'- -UGUCGGucuaGCGcCACUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 49430 0.66 0.880913
Target:  5'- nGCcGCCGcGUCGUggacaugucguccGGUGcCCGCCAGGc -3'
miRNA:   3'- -UGuCGGUcUAGCG-------------CCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 49733 0.67 0.828101
Target:  5'- gACGGCCgacgGGGUCGgGGUcGCgGCgGGGg -3'
miRNA:   3'- -UGUCGG----UCUAGCgCCAcUGgUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 49817 0.81 0.173643
Target:  5'- gGCAGCCAGcgCGUGGgGGUCACCAGGa -3'
miRNA:   3'- -UGUCGGUCuaGCGCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 50152 0.66 0.859863
Target:  5'- cGCAGCUGGAgCGCGuGcuggagacGGCCGCCAGc -3'
miRNA:   3'- -UGUCGGUCUaGCGC-Ca-------CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 51489 0.71 0.587996
Target:  5'- cGCAGCCcug-CGCGGUcgcuuuGGCCGCgCAGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCCA------CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 51565 0.68 0.765227
Target:  5'- cGCGGCCGGAgcggcgccucccaUCGCGGaGGCCggagagACCgAGGc -3'
miRNA:   3'- -UGUCGGUCU-------------AGCGCCaCUGG------UGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 51576 0.67 0.828101
Target:  5'- cGCAGCCGGAggCGcCGGgucagucgGcACCGCgGGGc -3'
miRNA:   3'- -UGUCGGUCUa-GC-GCCa-------C-UGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 51791 0.71 0.596026
Target:  5'- cGCGGUCGGucggcgguaggUGCGGUGuCUACCGGGa -3'
miRNA:   3'- -UGUCGGUCua---------GCGCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 52044 0.73 0.47162
Target:  5'- cACGGCCGuggcGAacaCGCGGgcaucGGCCACCGGGg -3'
miRNA:   3'- -UGUCGGU----CUa--GCGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 53041 0.7 0.648457
Target:  5'- uGCGcGCCAGcaCGCGGcagcUGcACCGCCAGGc -3'
miRNA:   3'- -UGU-CGGUCuaGCGCC----AC-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 54626 0.68 0.76616
Target:  5'- -gGGCCGGAgaggccCGCGGgcucACCACgGGGg -3'
miRNA:   3'- ugUCGGUCUa-----GCGCCac--UGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 54676 0.79 0.244265
Target:  5'- aGCGGCCGGGUCGCGGcgaggagGGCgaggGCCAGGa -3'
miRNA:   3'- -UGUCGGUCUAGCGCCa------CUGg---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 55536 0.67 0.844357
Target:  5'- --cGCCAcgcggCGCGccucacguacGUGGCCACCGGGg -3'
miRNA:   3'- uguCGGUcua--GCGC----------CACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 56178 0.67 0.81971
Target:  5'- uACAGCCcGggCGUGGUGGCCuggaagacguCguGGg -3'
miRNA:   3'- -UGUCGGuCuaGCGCCACUGGu---------GguCC- -5'
21380 5' -57.3 NC_004812.1 + 56704 0.7 0.657527
Target:  5'- cCAGCCGGAUCGgcUGGUGGuacggacagggccUCGCCAGa -3'
miRNA:   3'- uGUCGGUCUAGC--GCCACU-------------GGUGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.