miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 57676 0.7 0.668591
Target:  5'- cACcuCCGGGcCGCGGUcGAgCGCCAGGa -3'
miRNA:   3'- -UGucGGUCUaGCGCCA-CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58349 0.67 0.802437
Target:  5'- cCA-CCAGcgCGCGGgucccGGCCuCCAGGg -3'
miRNA:   3'- uGUcGGUCuaGCGCCa----CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58401 0.67 0.814595
Target:  5'- gGCGGCCgccgccuggaggcugGGGggGCGGcggGACCcgGCCAGGa -3'
miRNA:   3'- -UGUCGG---------------UCUagCGCCa--CUGG--UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58776 0.68 0.76616
Target:  5'- gGCgAGCgAGggCGCGGUGGgCuuuCCGGGc -3'
miRNA:   3'- -UG-UCGgUCuaGCGCCACUgGu--GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 58929 0.68 0.756779
Target:  5'- -aAGCCGGucUCgGCGGgGGCCGCCuGGc -3'
miRNA:   3'- ugUCGGUCu-AG-CGCCaCUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 58975 0.69 0.728029
Target:  5'- uGCGGgCGGGggUCGCGGgucgGGuuACCGGGg -3'
miRNA:   3'- -UGUCgGUCU--AGCGCCa---CUggUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 59140 0.73 0.47162
Target:  5'- -gGGCCAGGUCcUGGUacACCGCCAGGu -3'
miRNA:   3'- ugUCGGUCUAGcGCCAc-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 59392 0.69 0.737705
Target:  5'- -uGGCCAGcgaCGUGG-GcACCGCCGGGu -3'
miRNA:   3'- ugUCGGUCua-GCGCCaC-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 60485 0.66 0.874569
Target:  5'- cCGGCCAGggCGCGGUuGAagaaCGgaCGGGg -3'
miRNA:   3'- uGUCGGUCuaGCGCCA-CUg---GUg-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 61041 0.66 0.874569
Target:  5'- cGCGGCCG---UGCGGUuagcccgcucGACCccGCCGGGg -3'
miRNA:   3'- -UGUCGGUcuaGCGCCA----------CUGG--UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 61111 0.67 0.828101
Target:  5'- cCGGCCGGAcacgCGCGGgcguagacguACC-CCAGGg -3'
miRNA:   3'- uGUCGGUCUa---GCGCCac--------UGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 61304 0.66 0.880913
Target:  5'- gGCGGCCuccgcGGUcguucaaCGCGGUGgagaGCCACCGcGGc -3'
miRNA:   3'- -UGUCGGu----CUA-------GCGCCAC----UGGUGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 62139 0.7 0.658534
Target:  5'- -aGGCCGGAUCgGCGGcgcgggcGGCCuCCGGGu -3'
miRNA:   3'- ugUCGGUCUAG-CGCCa------CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 63211 0.71 0.632311
Target:  5'- cACGGCCgAGAccgaguucgggcccgUCGCGGUGACgCACaugcuGGGg -3'
miRNA:   3'- -UGUCGG-UCU---------------AGCGCCACUG-GUGg----UCC- -5'
21380 5' -57.3 NC_004812.1 + 63538 0.68 0.756779
Target:  5'- -gAGCUccaGGGUCGUGGguccGGCCGgCAGGg -3'
miRNA:   3'- ugUCGG---UCUAGCGCCa---CUGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 64018 0.66 0.881608
Target:  5'- uCGGUCAGcUCGgGGccccgGAgCGCCAGGc -3'
miRNA:   3'- uGUCGGUCuAGCgCCa----CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 65485 0.68 0.793572
Target:  5'- -gGGCCgAGcgCGCGcG-GACCACgGGGg -3'
miRNA:   3'- ugUCGG-UCuaGCGC-CaCUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 67079 0.68 0.76616
Target:  5'- cGCcGCCAG---GCGGUcGACCACCGGc -3'
miRNA:   3'- -UGuCGGUCuagCGCCA-CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 67688 0.66 0.84909
Target:  5'- gGCGGCCAGGguuccgagcagggCGCGGguggcgGACUggGCgAGGa -3'
miRNA:   3'- -UGUCGGUCUa------------GCGCCa-----CUGG--UGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 68201 0.67 0.843561
Target:  5'- -gGGCUGGGccgUGCGGUcgaucaugauguuGACCAUCAGGa -3'
miRNA:   3'- ugUCGGUCUa--GCGCCA-------------CUGGUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.