miRNA display CGI


Results 121 - 140 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 68223 0.67 0.83632
Target:  5'- cCGGCCGGGggugCGCGG-GG--GCCGGGg -3'
miRNA:   3'- uGUCGGUCUa---GCGCCaCUggUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 68953 0.7 0.667586
Target:  5'- gAUGGCCgcgagggucgaguGGGUCGUGGUGGucugcggguUCACCAGGu -3'
miRNA:   3'- -UGUCGG-------------UCUAGCGCCACU---------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 69143 0.71 0.628273
Target:  5'- cCGGCgAGGUC-CGaGUGGCaCGCCAGGu -3'
miRNA:   3'- uGUCGgUCUAGcGC-CACUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70232 0.67 0.828101
Target:  5'- -uGGCCcGGUCGCaGUacagaaACCGCCGGGg -3'
miRNA:   3'- ugUCGGuCUAGCGcCAc-----UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70299 0.67 0.83632
Target:  5'- gGCGuuGUCgAGAUCGCGGaacucGGCCauGCCGGGg -3'
miRNA:   3'- -UGU--CGG-UCUAGCGCCa----CUGG--UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70477 0.71 0.598036
Target:  5'- cCAGCCAgcaacggcGAUCgGCGGUGACC--CAGGg -3'
miRNA:   3'- uGUCGGU--------CUAG-CGCCACUGGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70900 0.67 0.809422
Target:  5'- uGCGGCCAGugggccgccccCGCaGGUcuGGCCGCCAGc -3'
miRNA:   3'- -UGUCGGUCua---------GCG-CCA--CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 70984 0.71 0.577988
Target:  5'- aGCAccGCgGGGccCGCGGgucGGCCGCCAGGg -3'
miRNA:   3'- -UGU--CGgUCUa-GCGCCa--CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 71719 0.67 0.811153
Target:  5'- -gGGCCGGGaagUCGCucgGGUGGCggaggGCCAGGa -3'
miRNA:   3'- ugUCGGUCU---AGCG---CCACUGg----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 72007 0.67 0.81971
Target:  5'- cGCGGUCGucUCGCGGUcGCUcggggGCCGGGa -3'
miRNA:   3'- -UGUCGGUcuAGCGCCAcUGG-----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 72188 0.66 0.874569
Target:  5'- uGCGGCCGGGggccccgggucgUCGCGG-GGCguCCGcGGc -3'
miRNA:   3'- -UGUCGGUCU------------AGCGCCaCUGguGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 72489 0.66 0.867319
Target:  5'- gGCGGCgCcucgGGGUCGgGGggcgcgccGCCGCCGGGg -3'
miRNA:   3'- -UGUCG-G----UCUAGCgCCac------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 72861 0.7 0.668591
Target:  5'- uCAGCgCGGAcagCGCGGgcagcugcGCCGCCAGGc -3'
miRNA:   3'- uGUCG-GUCUa--GCGCCac------UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 73050 0.66 0.874569
Target:  5'- -aGGCCGGGUCGCuGcgcagGGCCACgacgaCGGGg -3'
miRNA:   3'- ugUCGGUCUAGCGcCa----CUGGUG-----GUCC- -5'
21380 5' -57.3 NC_004812.1 + 73228 0.66 0.867319
Target:  5'- gGCGGCCGGccUGCGGaccGCCGCCgcccuGGGg -3'
miRNA:   3'- -UGUCGGUCuaGCGCCac-UGGUGG-----UCC- -5'
21380 5' -57.3 NC_004812.1 + 74068 0.66 0.852207
Target:  5'- aGCGGCgGGcgCGCGcG-GGCCGCCucGGc -3'
miRNA:   3'- -UGUCGgUCuaGCGC-CaCUGGUGGu-CC- -5'
21380 5' -57.3 NC_004812.1 + 74104 0.67 0.802437
Target:  5'- aGCAGCgCcccgAGcUUGuCGGUGACgGCCGGGa -3'
miRNA:   3'- -UGUCG-G----UCuAGC-GCCACUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 74194 0.77 0.287784
Target:  5'- gGCAGguCCAGGUCGCuGGUGGCCucgcgcagcuCCAGGg -3'
miRNA:   3'- -UGUC--GGUCUAGCG-CCACUGGu---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 75272 0.67 0.844357
Target:  5'- -gGGCCuGcgCGCcGUGAUCACCgAGGc -3'
miRNA:   3'- ugUCGGuCuaGCGcCACUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 75383 0.72 0.528631
Target:  5'- cGCGGCCAGGgcguccUCGCucgGACaCGCCAGGg -3'
miRNA:   3'- -UGUCGGUCU------AGCGccaCUG-GUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.