miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 128243 0.69 0.737705
Target:  5'- cGCGGCgCAGGUCGCGcGcggcgGGCCAgCGGa -3'
miRNA:   3'- -UGUCG-GUCUAGCGC-Ca----CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 127738 0.67 0.83632
Target:  5'- cGCGGCCAGcgcacgCGCGGcgcGGCgGCgGGGu -3'
miRNA:   3'- -UGUCGGUCua----GCGCCa--CUGgUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 126754 0.66 0.874569
Target:  5'- cGCGGagaGGAUC-CGGccucaGGCCACCGGGu -3'
miRNA:   3'- -UGUCgg-UCUAGcGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 126326 0.67 0.81971
Target:  5'- cCGGCCGGGaaGCGGUGuCCgacGCCcGGa -3'
miRNA:   3'- uGUCGGUCUagCGCCACuGG---UGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 126049 0.66 0.852207
Target:  5'- -gAGCCGGAagGCGGcGACgCGCCGc- -3'
miRNA:   3'- ugUCGGUCUagCGCCaCUG-GUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 124503 0.68 0.784565
Target:  5'- --cGCCAGggCGCcaUGGCCcACCAGGc -3'
miRNA:   3'- uguCGGUCuaGCGccACUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 123077 0.67 0.828101
Target:  5'- gACGGCgCAGGucUCGCGGggcggGGCCGgCGcGGa -3'
miRNA:   3'- -UGUCG-GUCU--AGCGCCa----CUGGUgGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 122456 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122321 0.7 0.658534
Target:  5'- --cGCguGGUgCGCguggggGGUGGCCGCCAGGu -3'
miRNA:   3'- uguCGguCUA-GCG------CCACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122285 0.66 0.881608
Target:  5'- -gGGCgCGGcggCGcCGGagGGCCGCCGGGg -3'
miRNA:   3'- ugUCG-GUCua-GC-GCCa-CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 122246 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 121904 0.7 0.642404
Target:  5'- cGCAgGCCGGG-CGCGGgccugaggucgggccUGAgCGCCGGGg -3'
miRNA:   3'- -UGU-CGGUCUaGCGCC---------------ACUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 121739 0.72 0.518936
Target:  5'- -gGGCCGGcgCGCGGcgggGGgCGCCGGGc -3'
miRNA:   3'- ugUCGGUCuaGCGCCa---CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 120378 0.75 0.384209
Target:  5'- cGCGGCCGGGggcgcguaCGCGGgcGACCGCgAGGg -3'
miRNA:   3'- -UGUCGGUCUa-------GCGCCa-CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 119492 0.67 0.844357
Target:  5'- cGCGGCggCAGGg-GCGGcguccgcgGGCCGCCGGGc -3'
miRNA:   3'- -UGUCG--GUCUagCGCCa-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 119012 0.72 0.518936
Target:  5'- gACuGCCGGGUgaaCGCGGgcGGCCACCGGc -3'
miRNA:   3'- -UGuCGGUCUA---GCGCCa-CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 117646 0.8 0.206355
Target:  5'- cGCGGCgGGGUCGCGGgccGGCCgggcGCCGGGg -3'
miRNA:   3'- -UGUCGgUCUAGCGCCa--CUGG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 117611 0.68 0.756779
Target:  5'- -gGGCCGGGggaggggggGCGGcgcgGGCCGCCGGGn -3'
miRNA:   3'- ugUCGGUCUag-------CGCCa---CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 117208 0.73 0.490298
Target:  5'- gGCAGCCGGcUCG-GGcGGCCGCCGGc -3'
miRNA:   3'- -UGUCGGUCuAGCgCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 114662 0.7 0.647448
Target:  5'- uGCGGCCcgccaccGGGUCGCGGUccaggGGCgGCCGcGGg -3'
miRNA:   3'- -UGUCGG-------UCUAGCGCCA-----CUGgUGGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.