miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 114642 0.67 0.820557
Target:  5'- uGCAGCCGGccguucagCGCGGgcaccaucaagagcgGGCCgguGCCGGGc -3'
miRNA:   3'- -UGUCGGUCua------GCGCCa--------------CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 114459 0.66 0.874569
Target:  5'- cACAGuCCAuAUaucccCGgGcGUGGCCGCCGGGg -3'
miRNA:   3'- -UGUC-GGUcUA-----GCgC-CACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 113761 0.67 0.843561
Target:  5'- cGCGGCCAGGUa---GUGGCCACCcuugugcGGGu -3'
miRNA:   3'- -UGUCGGUCUAgcgcCACUGGUGG-------UCC- -5'
21380 5' -57.3 NC_004812.1 + 112978 0.71 0.577988
Target:  5'- gGCGGCgauGGAUCGCGGcgccgcGGCCGCCgAGGc -3'
miRNA:   3'- -UGUCGg--UCUAGCGCCa-----CUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 112626 0.68 0.747291
Target:  5'- cCGGCCGG-UCG-GGcGACCGCgGGGa -3'
miRNA:   3'- uGUCGGUCuAGCgCCaCUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 112372 0.67 0.828101
Target:  5'- cGCucuGCCGGAcUCGCGGcGGCCACa--- -3'
miRNA:   3'- -UGu--CGGUCU-AGCGCCaCUGGUGgucc -5'
21380 5' -57.3 NC_004812.1 + 112359 0.66 0.867319
Target:  5'- aGCGGCUAucGGcccUCGCGGUcGCgUACCAGGu -3'
miRNA:   3'- -UGUCGGU--CU---AGCGCCAcUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 112233 0.67 0.83632
Target:  5'- cCGGCCGGA-CGCGGgGGCgGaCGGGg -3'
miRNA:   3'- uGUCGGUCUaGCGCCaCUGgUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 108760 0.72 0.548213
Target:  5'- uGCGGCUGGGgggCGCGGgggcgccuacGACCugCAGGc -3'
miRNA:   3'- -UGUCGGUCUa--GCGCCa---------CUGGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 107634 0.75 0.400824
Target:  5'- uGCGGCCGcGUCGCGG-GGCacguCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcUAGCGCCaCUG----GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 107583 0.68 0.76988
Target:  5'- gGCGGCgCGGuugaccucguccgCGUGGgcccGGCCGCCGGGg -3'
miRNA:   3'- -UGUCG-GUCua-----------GCGCCa---CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 107198 0.66 0.852207
Target:  5'- gGCGGCCcGGGgccacggCGCGG--GCCGCCuGGg -3'
miRNA:   3'- -UGUCGG-UCUa------GCGCCacUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 106552 0.7 0.638367
Target:  5'- cGCAGCgGG--CGCGGUGGuccacguuaaUCGCCAGGg -3'
miRNA:   3'- -UGUCGgUCuaGCGCCACU----------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 105199 0.68 0.793572
Target:  5'- -gAGCgCGGggCGCGGgcgcgGGCC-CCGGGc -3'
miRNA:   3'- ugUCG-GUCuaGCGCCa----CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 103928 0.69 0.697562
Target:  5'- -aAGcCCAGGUCcucgagcagGCGGUuauagagGGCCGCCGGGg -3'
miRNA:   3'- ugUC-GGUCUAG---------CGCCA-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 103802 0.69 0.688609
Target:  5'- cCAGCUGGGUCGCGccgacGUGACCACgguCAGc -3'
miRNA:   3'- uGUCGGUCUAGCGC-----CACUGGUG---GUCc -5'
21380 5' -57.3 NC_004812.1 + 103767 0.66 0.874569
Target:  5'- -gGGCCGcGGUCggGCGuGUGGCCGucccCCAGGc -3'
miRNA:   3'- ugUCGGU-CUAG--CGC-CACUGGU----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 102245 0.74 0.421356
Target:  5'- gACGGCCAGAacuacaccgaggggaUCGCGGUGAUCuuCAaGGa -3'
miRNA:   3'- -UGUCGGUCU---------------AGCGCCACUGGugGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 101473 0.69 0.692593
Target:  5'- cCAGCUccuggcccuggcgcaGGGUCcgGCGGUagaaGACCGCCGGGu -3'
miRNA:   3'- uGUCGG---------------UCUAG--CGCCA----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 101203 0.7 0.668591
Target:  5'- -gGGCCAGGggcccCGCGGccGCCAgCAGGg -3'
miRNA:   3'- ugUCGGUCUa----GCGCCacUGGUgGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.