miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 101023 0.67 0.82727
Target:  5'- gGCAG-CGGAUCGCcucggGGUGcacgcggGCCAgCAGGg -3'
miRNA:   3'- -UGUCgGUCUAGCG-----CCAC-------UGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 100894 0.68 0.747291
Target:  5'- cGCGGCCcccgaggcGGggCGCGGagacGGCCGCgAGGa -3'
miRNA:   3'- -UGUCGG--------UCuaGCGCCa---CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 100775 0.69 0.698554
Target:  5'- cGCAGUCGccGAUCguGCGGUGGCgGCCucGGg -3'
miRNA:   3'- -UGUCGGU--CUAG--CGCCACUGgUGGu-CC- -5'
21380 5' -57.3 NC_004812.1 + 100380 0.67 0.844357
Target:  5'- cGCcGCCGGGgggCGCGa-GGCCACCGGc -3'
miRNA:   3'- -UGuCGGUCUa--GCGCcaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 100074 0.7 0.648457
Target:  5'- -gAGUguGAUCGgGGgccgGGCCGCCGGa -3'
miRNA:   3'- ugUCGguCUAGCgCCa---CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 98679 0.68 0.775425
Target:  5'- -gAGCCGGGgcgggCGCGGUcGAaccgccgCGCCGGGg -3'
miRNA:   3'- ugUCGGUCUa----GCGCCA-CUg------GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 98069 0.69 0.728029
Target:  5'- gGCGGCCGGAgC-CGGgccccgGGCUAUCGGGg -3'
miRNA:   3'- -UGUCGGUCUaGcGCCa-----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 97937 0.69 0.736741
Target:  5'- gGCGGCCAGGuUCGCc-UGGCCGgugggguCCAGGg -3'
miRNA:   3'- -UGUCGGUCU-AGCGccACUGGU-------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 97149 0.68 0.756779
Target:  5'- cGCGGUCg---CGUGGuUGAUCGCCGGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCC-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 96855 0.66 0.852207
Target:  5'- gACGGCgGGGugaUCGUc--GGCCGCCAGGa -3'
miRNA:   3'- -UGUCGgUCU---AGCGccaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 95164 0.68 0.784565
Target:  5'- cCGGCCGGucUCgGCGGgcccucaGACgGCCGGGg -3'
miRNA:   3'- uGUCGGUCu-AG-CGCCa------CUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 94503 0.69 0.705484
Target:  5'- -gGGCCAGcgCGCGGUucugguggacggggGACC-UCGGGg -3'
miRNA:   3'- ugUCGGUCuaGCGCCA--------------CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 94414 0.67 0.84515
Target:  5'- cGCGGCCGGGgggccgaaucgguggCGCGGgcGGCCGCgGGc -3'
miRNA:   3'- -UGUCGGUCUa--------------GCGCCa-CUGGUGgUCc -5'
21380 5' -57.3 NC_004812.1 + 94318 0.7 0.648457
Target:  5'- --cGCCGGcugcgCgGCGGUGACCGCguGGg -3'
miRNA:   3'- uguCGGUCua---G-CGCCACUGGUGguCC- -5'
21380 5' -57.3 NC_004812.1 + 94161 0.69 0.737705
Target:  5'- -gGGCCAGAagGCGucuUGGCCAaaguCCAGGa -3'
miRNA:   3'- ugUCGGUCUagCGCc--ACUGGU----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 93840 0.68 0.793572
Target:  5'- cGCGGCCauccgcucgcagAGGUCGCGGgggGcccggcagcccaGCCGCCGGu -3'
miRNA:   3'- -UGUCGG------------UCUAGCGCCa--C------------UGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 93727 0.68 0.793572
Target:  5'- -gAGCCGGGcucCGCGGcagacggGGCCGCCGcGGa -3'
miRNA:   3'- ugUCGGUCUa--GCGCCa------CUGGUGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 93536 0.66 0.852207
Target:  5'- aGCGGCCGGAgggggcCGUGGgGGCggaGCCAGa -3'
miRNA:   3'- -UGUCGGUCUa-----GCGCCaCUGg--UGGUCc -5'
21380 5' -57.3 NC_004812.1 + 92563 0.76 0.352377
Target:  5'- --cGCCAGAUCGaCGGUGaacuGCCGCCuGGc -3'
miRNA:   3'- uguCGGUCUAGC-GCCAC----UGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 91984 0.68 0.775425
Target:  5'- cGCGGCCGauGGUUGUgacGGUGGCCGCgacgugcaggCAGGg -3'
miRNA:   3'- -UGUCGGU--CUAGCG---CCACUGGUG----------GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.