miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 91779 0.68 0.775425
Target:  5'- gGCGGCCAugcGGUCGCccaUGGCCGUCAGGc -3'
miRNA:   3'- -UGUCGGU---CUAGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91536 0.74 0.41789
Target:  5'- cGCGGCCAGggCgGCGGcGGCCGCCGa- -3'
miRNA:   3'- -UGUCGGUCuaG-CGCCaCUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 91315 0.67 0.83632
Target:  5'- gGCA-CCuGGUCGCGGcgGGCCAgCAGc -3'
miRNA:   3'- -UGUcGGuCUAGCGCCa-CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 89663 0.67 0.83632
Target:  5'- --cGCCgAGAUCGaGGUcGACCcCCGGGu -3'
miRNA:   3'- uguCGG-UCUAGCgCCA-CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 88949 0.66 0.867319
Target:  5'- -uGGCgAGGagggCGCGGccGGCgGCCAGGg -3'
miRNA:   3'- ugUCGgUCUa---GCGCCa-CUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 88761 0.68 0.76616
Target:  5'- aACAGCCAGuucAUCGCGcUGAugcCCACCGu- -3'
miRNA:   3'- -UGUCGGUC---UAGCGCcACU---GGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 87068 0.69 0.737705
Target:  5'- cGCGGgCAGGggCGCGGgggGGCgGCCGGa -3'
miRNA:   3'- -UGUCgGUCUa-GCGCCa--CUGgUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 86917 0.67 0.844357
Target:  5'- uCAGCCAGuagagCGCGGc--CC-CCAGGa -3'
miRNA:   3'- uGUCGGUCua---GCGCCacuGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 86768 0.67 0.81971
Target:  5'- cGCAGCgGcGA-CGCGGgcgcgagGGCgACCGGGg -3'
miRNA:   3'- -UGUCGgU-CUaGCGCCa------CUGgUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 86727 0.71 0.6081
Target:  5'- aGCGGCCGGAcgaCGaCGGcGACCagcGCCGGGc -3'
miRNA:   3'- -UGUCGGUCUa--GC-GCCaCUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 85699 0.68 0.784565
Target:  5'- gGCGGCCAGAccUGCGGgGGCgGCCcacuGGc -3'
miRNA:   3'- -UGUCGGUCUa-GCGCCaCUGgUGGu---CC- -5'
21380 5' -57.3 NC_004812.1 + 85267 0.71 0.6081
Target:  5'- -uGGCCAGcgucacCGCGGUGugCAgCGGGc -3'
miRNA:   3'- ugUCGGUCua----GCGCCACugGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 84939 0.66 0.872415
Target:  5'- gGCcGCCGGGUCGa-GUGGCUgggggaggcgugggGCCGGGu -3'
miRNA:   3'- -UGuCGGUCUAGCgcCACUGG--------------UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 84655 0.66 0.852207
Target:  5'- cGCGGCgCGcGUCGCGGcagGGCCGCCc-- -3'
miRNA:   3'- -UGUCG-GUcUAGCGCCa--CUGGUGGucc -5'
21380 5' -57.3 NC_004812.1 + 83733 0.69 0.698554
Target:  5'- --uGCCGGGgaCGCGGgcccgGcuGCCGCCAGGg -3'
miRNA:   3'- uguCGGUCUa-GCGCCa----C--UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 83353 0.66 0.881608
Target:  5'- cACuGUCGGGUcCGCGccGGCC-CCAGGg -3'
miRNA:   3'- -UGuCGGUCUA-GCGCcaCUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 83196 0.71 0.577988
Target:  5'- cGCGGCgGGAggCGCGGcGGCCGCgcuCGGGg -3'
miRNA:   3'- -UGUCGgUCUa-GCGCCaCUGGUG---GUCC- -5'
21380 5' -57.3 NC_004812.1 + 82334 0.67 0.81971
Target:  5'- -gAGCCGGAccCGCGGacgGugCgcgGCCGGGg -3'
miRNA:   3'- ugUCGGUCUa-GCGCCa--CugG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 81328 0.66 0.86287
Target:  5'- -gGGCCA--UCGCcucGGUGAucacggcgcgcaggcCCGCCAGGg -3'
miRNA:   3'- ugUCGGUcuAGCG---CCACU---------------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 80361 0.69 0.708445
Target:  5'- cACAGCCGGGcccgUGUGGUGuuuCCGCCGc- -3'
miRNA:   3'- -UGUCGGUCUa---GCGCCACu--GGUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.