miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 92563 0.76 0.352377
Target:  5'- --cGCCAGAUCGaCGGUGaacuGCCGCCuGGc -3'
miRNA:   3'- uguCGGUCUAGC-GCCAC----UGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 74194 0.77 0.287784
Target:  5'- gGCAGguCCAGGUCGCuGGUGGCCucgcgcagcuCCAGGg -3'
miRNA:   3'- -UGUC--GGUCUAGCG-CCACUGGu---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 54676 0.79 0.244265
Target:  5'- aGCGGCCGGGUCGCGGcgaggagGGCgaggGCCAGGa -3'
miRNA:   3'- -UGUCGGUCUAGCGCCa------CUGg---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 46293 0.8 0.211442
Target:  5'- gGCGGCCGGAggcCGCGGcgGGCCGCgCGGGc -3'
miRNA:   3'- -UGUCGGUCUa--GCGCCa-CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 117646 0.8 0.206355
Target:  5'- cGCGGCgGGGUCGCGGgccGGCCgggcGCCGGGg -3'
miRNA:   3'- -UGUCGgUCUAGCGCCa--CUGG----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 13010 0.73 0.47162
Target:  5'- cGCcGCCGGAg-GCGGccUGAUCGCCGGGg -3'
miRNA:   3'- -UGuCGGUCUagCGCC--ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 52044 0.73 0.47162
Target:  5'- cACGGCCGuggcGAacaCGCGGgcaucGGCCACCGGGg -3'
miRNA:   3'- -UGUCGGU----CUa--GCGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 85267 0.71 0.6081
Target:  5'- -uGGCCAGcgucacCGCGGUGugCAgCGGGc -3'
miRNA:   3'- ugUCGGUCua----GCGCCACugGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 51791 0.71 0.596026
Target:  5'- cGCGGUCGGucggcgguaggUGCGGUGuCUACCGGGa -3'
miRNA:   3'- -UGUCGGUCua---------GCGCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 51489 0.71 0.587996
Target:  5'- cGCAGCCcug-CGCGGUcgcuuuGGCCGCgCAGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCCA------CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 112978 0.71 0.577988
Target:  5'- gGCGGCgauGGAUCGCGGcgccgcGGCCGCCgAGGc -3'
miRNA:   3'- -UGUCGg--UCUAGCGCCa-----CUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 75446 0.71 0.576989
Target:  5'- gGCGGCCGGGUCGCcgcggaggcggacGGUcugcuccgcGGCCgcgGCCAGGu -3'
miRNA:   3'- -UGUCGGUCUAGCG-------------CCA---------CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 108760 0.72 0.548213
Target:  5'- uGCGGCUGGGgggCGCGGgggcgccuacGACCugCAGGc -3'
miRNA:   3'- -UGUCGGUCUa--GCGCCa---------CUGGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 75383 0.72 0.528631
Target:  5'- cGCGGCCAGGgcguccUCGCucgGACaCGCCAGGg -3'
miRNA:   3'- -UGUCGGUCU------AGCGccaCUG-GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 121739 0.72 0.518936
Target:  5'- -gGGCCGGcgCGCGGcgggGGgCGCCGGGc -3'
miRNA:   3'- ugUCGGUCuaGCGCCa---CUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 142193 0.72 0.518936
Target:  5'- -uGGCCGGcgCGgGGcUGGCCGCCGGc -3'
miRNA:   3'- ugUCGGUCuaGCgCC-ACUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 19628 0.73 0.499765
Target:  5'- cGCGuCCGGucUCGCGGcgacgugGGCCGCCAGGg -3'
miRNA:   3'- -UGUcGGUCu-AGCGCCa------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 117208 0.73 0.490298
Target:  5'- gGCAGCCGGcUCG-GGcGGCCGCCGGc -3'
miRNA:   3'- -UGUCGGUCuAGCgCCaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 122246 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 30377 0.73 0.480915
Target:  5'- gGCGGCCGGGUCGgGGcucuCCuCCGGGg -3'
miRNA:   3'- -UGUCGGUCUAGCgCCacu-GGuGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.