miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 6842 0.7 0.678619
Target:  5'- gGCGGCCc--UCGCGGUcggcgaggcGGCCcGCCGGGg -3'
miRNA:   3'- -UGUCGGucuAGCGCCA---------CUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 78941 0.7 0.678619
Target:  5'- cCGGCUgGGGUCGgGG-GugCGCCGGGg -3'
miRNA:   3'- uGUCGG-UCUAGCgCCaCugGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 101473 0.69 0.692593
Target:  5'- cCAGCUccuggcccuggcgcaGGGUCcgGCGGUagaaGACCGCCGGGu -3'
miRNA:   3'- uGUCGG---------------UCUAG--CGCCA----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 103928 0.69 0.697562
Target:  5'- -aAGcCCAGGUCcucgagcagGCGGUuauagagGGCCGCCGGGg -3'
miRNA:   3'- ugUC-GGUCUAG---------CGCCA-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 24670 0.69 0.698554
Target:  5'- uGCAGCagCAGGUCGCGGcacggGAucCCGCgAGGc -3'
miRNA:   3'- -UGUCG--GUCUAGCGCCa----CU--GGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 75888 0.69 0.698554
Target:  5'- -gGGCCAgGGUCGCGGUcuuggcguucGCCGCgAGGg -3'
miRNA:   3'- ugUCGGU-CUAGCGCCAc---------UGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 83733 0.69 0.698554
Target:  5'- --uGCCGGGgaCGCGGgcccgGcuGCCGCCAGGg -3'
miRNA:   3'- uguCGGUCUa-GCGCCa----C--UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 62139 0.7 0.658534
Target:  5'- -aGGCCGGAUCgGCGGcgcgggcGGCCuCCGGGu -3'
miRNA:   3'- ugUCGGUCUAG-CGCCa------CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 56704 0.7 0.657527
Target:  5'- cCAGCCGGAUCGgcUGGUGGuacggacagggccUCGCCAGa -3'
miRNA:   3'- uGUCGGUCUAGC--GCCACU-------------GGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 94318 0.7 0.648457
Target:  5'- --cGCCGGcugcgCgGCGGUGACCGCguGGg -3'
miRNA:   3'- uguCGGUCua---G-CGCCACUGGUGguCC- -5'
21380 5' -57.3 NC_004812.1 + 51791 0.71 0.596026
Target:  5'- cGCGGUCGGucggcgguaggUGCGGUGuCUACCGGGa -3'
miRNA:   3'- -UGUCGGUCua---------GCGCCACuGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 85267 0.71 0.6081
Target:  5'- -uGGCCAGcgucacCGCGGUGugCAgCGGGc -3'
miRNA:   3'- ugUCGGUCua----GCGCCACugGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 86727 0.71 0.6081
Target:  5'- aGCGGCCGGAcgaCGaCGGcGACCagcGCCGGGc -3'
miRNA:   3'- -UGUCGGUCUa--GC-GCCaCUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 19058 0.71 0.628273
Target:  5'- gGCGGCCgAGAcCGCGGcccaGGCCcgcGCCGGGc -3'
miRNA:   3'- -UGUCGG-UCUaGCGCCa---CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 76354 0.71 0.628273
Target:  5'- cACcGCCAGGUcCGCGGccGCCGCCcccAGGg -3'
miRNA:   3'- -UGuCGGUCUA-GCGCCacUGGUGG---UCC- -5'
21380 5' -57.3 NC_004812.1 + 8354 0.7 0.638367
Target:  5'- cGCGGCCGccccaccgCGuCGGcGGCCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcua-----GC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 121904 0.7 0.642404
Target:  5'- cGCAgGCCGGG-CGCGGgccugaggucgggccUGAgCGCCGGGg -3'
miRNA:   3'- -UGU-CGGUCUaGCGCC---------------ACUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 100074 0.7 0.648457
Target:  5'- -gAGUguGAUCGgGGgccgGGCCGCCGGa -3'
miRNA:   3'- ugUCGguCUAGCgCCa---CUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 34732 0.7 0.648457
Target:  5'- gGCAGCCGccGAUCGCcguccuggGGcGGCC-CCGGGg -3'
miRNA:   3'- -UGUCGGU--CUAGCG--------CCaCUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 100775 0.69 0.698554
Target:  5'- cGCAGUCGccGAUCguGCGGUGGCgGCCucGGg -3'
miRNA:   3'- -UGUCGGU--CUAG--CGCCACUGgUGGu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.