Results 101 - 120 of 272 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 129447 | 0.69 | 0.718273 |
Target: 5'- gGCGGCaCGGcgCGCGc-GGCCGCCAGc -3' miRNA: 3'- -UGUCG-GUCuaGCGCcaCUGGUGGUCc -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 37532 | 0.69 | 0.728029 |
Target: 5'- gGCGGCCGucGUUGCGGUGAaaguCCGCCGu- -3' miRNA: 3'- -UGUCGGUc-UAGCGCCACU----GGUGGUcc -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 98069 | 0.69 | 0.728029 |
Target: 5'- gGCGGCCGGAgC-CGGgccccgGGCUAUCGGGg -3' miRNA: 3'- -UGUCGGUCUaGcGCCa-----CUGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 97937 | 0.69 | 0.736741 |
Target: 5'- gGCGGCCAGGuUCGCc-UGGCCGgugggguCCAGGg -3' miRNA: 3'- -UGUCGGUCU-AGCGccACUGGU-------GGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 59392 | 0.69 | 0.737705 |
Target: 5'- -uGGCCAGcgaCGUGG-GcACCGCCGGGu -3' miRNA: 3'- ugUCGGUCua-GCGCCaC-UGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 103928 | 0.69 | 0.697562 |
Target: 5'- -aAGcCCAGGUCcucgagcagGCGGUuauagagGGCCGCCGGGg -3' miRNA: 3'- ugUC-GGUCUAG---------CGCCA-------CUGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 101473 | 0.69 | 0.692593 |
Target: 5'- cCAGCUccuggcccuggcgcaGGGUCcgGCGGUagaaGACCGCCGGGu -3' miRNA: 3'- uGUCGG---------------UCUAG--CGCCA----CUGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 76354 | 0.71 | 0.628273 |
Target: 5'- cACcGCCAGGUcCGCGGccGCCGCCcccAGGg -3' miRNA: 3'- -UGuCGGUCUA-GCGCCacUGGUGG---UCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 8354 | 0.7 | 0.638367 |
Target: 5'- cGCGGCCGccccaccgCGuCGGcGGCCGCCGGGg -3' miRNA: 3'- -UGUCGGUcua-----GC-GCCaCUGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 121904 | 0.7 | 0.642404 |
Target: 5'- cGCAgGCCGGG-CGCGGgccugaggucgggccUGAgCGCCGGGg -3' miRNA: 3'- -UGU-CGGUCUaGCGCC---------------ACUgGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 100074 | 0.7 | 0.648457 |
Target: 5'- -gAGUguGAUCGgGGgccgGGCCGCCGGa -3' miRNA: 3'- ugUCGguCUAGCgCCa---CUGGUGGUCc -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 34732 | 0.7 | 0.648457 |
Target: 5'- gGCAGCCGccGAUCGCcguccuggGGcGGCC-CCGGGg -3' miRNA: 3'- -UGUCGGU--CUAGCG--------CCaCUGGuGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 94318 | 0.7 | 0.648457 |
Target: 5'- --cGCCGGcugcgCgGCGGUGACCGCguGGg -3' miRNA: 3'- uguCGGUCua---G-CGCCACUGGUGguCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 56704 | 0.7 | 0.657527 |
Target: 5'- cCAGCCGGAUCGgcUGGUGGuacggacagggccUCGCCAGa -3' miRNA: 3'- uGUCGGUCUAGC--GCCACU-------------GGUGGUCc -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 62139 | 0.7 | 0.658534 |
Target: 5'- -aGGCCGGAUCgGCGGcgcgggcGGCCuCCGGGu -3' miRNA: 3'- ugUCGGUCUAG-CGCCa------CUGGuGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 72861 | 0.7 | 0.668591 |
Target: 5'- uCAGCgCGGAcagCGCGGgcagcugcGCCGCCAGGc -3' miRNA: 3'- uGUCG-GUCUa--GCGCCac------UGGUGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 129399 | 0.7 | 0.668591 |
Target: 5'- cGCAGCCAGAggCGCGGgcgcGGCgGCgCGGcGg -3' miRNA: 3'- -UGUCGGUCUa-GCGCCa---CUGgUG-GUC-C- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 101203 | 0.7 | 0.668591 |
Target: 5'- -gGGCCAGGggcccCGCGGccGCCAgCAGGg -3' miRNA: 3'- ugUCGGUCUa----GCGCCacUGGUgGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 6842 | 0.7 | 0.678619 |
Target: 5'- gGCGGCCc--UCGCGGUcggcgaggcGGCCcGCCGGGg -3' miRNA: 3'- -UGUCGGucuAGCGCCA---------CUGG-UGGUCC- -5' |
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21380 | 5' | -57.3 | NC_004812.1 | + | 78941 | 0.7 | 0.678619 |
Target: 5'- cCGGCUgGGGUCGgGG-GugCGCCGGGg -3' miRNA: 3'- uGUCGG-UCUAGCgCCaCugGUGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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