Results 121 - 140 of 272 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 97149 | 0.68 | 0.756779 |
Target: 5'- cGCGGUCg---CGUGGuUGAUCGCCGGGg -3' miRNA: 3'- -UGUCGGucuaGCGCC-ACUGGUGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 51565 | 0.68 | 0.765227 |
Target: 5'- cGCGGCCGGAgcggcgccucccaUCGCGGaGGCCggagagACCgAGGc -3' miRNA: 3'- -UGUCGGUCU-------------AGCGCCaCUGG------UGG-UCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 78978 | 0.69 | 0.718273 |
Target: 5'- --cGCCggGGGUCGgGG-GugCGCCGGGg -3' miRNA: 3'- uguCGG--UCUAGCgCCaCugGUGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 80361 | 0.69 | 0.708445 |
Target: 5'- cACAGCCGGGcccgUGUGGUGuuuCCGCCGc- -3' miRNA: 3'- -UGUCGGUCUa---GCGCCACu--GGUGGUcc -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 94503 | 0.69 | 0.705484 |
Target: 5'- -gGGCCAGcgCGCGGUucugguggacggggGACC-UCGGGg -3' miRNA: 3'- ugUCGGUCuaGCGCCA--------------CUGGuGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 56704 | 0.7 | 0.657527 |
Target: 5'- cCAGCCGGAUCGgcUGGUGGuacggacagggccUCGCCAGa -3' miRNA: 3'- uGUCGGUCUAGC--GCCACU-------------GGUGGUCc -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 62139 | 0.7 | 0.658534 |
Target: 5'- -aGGCCGGAUCgGCGGcgcgggcGGCCuCCGGGu -3' miRNA: 3'- ugUCGGUCUAG-CGCCa------CUGGuGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 72861 | 0.7 | 0.668591 |
Target: 5'- uCAGCgCGGAcagCGCGGgcagcugcGCCGCCAGGc -3' miRNA: 3'- uGUCG-GUCUa--GCGCCac------UGGUGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 129399 | 0.7 | 0.668591 |
Target: 5'- cGCAGCCAGAggCGCGGgcgcGGCgGCgCGGcGg -3' miRNA: 3'- -UGUCGGUCUa-GCGCCa---CUGgUG-GUC-C- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 101203 | 0.7 | 0.668591 |
Target: 5'- -gGGCCAGGggcccCGCGGccGCCAgCAGGg -3' miRNA: 3'- ugUCGGUCUa----GCGCCacUGGUgGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 6842 | 0.7 | 0.678619 |
Target: 5'- gGCGGCCc--UCGCGGUcggcgaggcGGCCcGCCGGGg -3' miRNA: 3'- -UGUCGGucuAGCGCCA---------CUGG-UGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 78941 | 0.7 | 0.678619 |
Target: 5'- cCGGCUgGGGUCGgGG-GugCGCCGGGg -3' miRNA: 3'- uGUCGG-UCUAGCgCCaCugGUGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 88761 | 0.68 | 0.76616 |
Target: 5'- aACAGCCAGuucAUCGCGcUGAugcCCACCGu- -3' miRNA: 3'- -UGUCGGUC---UAGCGCcACU---GGUGGUcc -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 101473 | 0.69 | 0.692593 |
Target: 5'- cCAGCUccuggcccuggcgcaGGGUCcgGCGGUagaaGACCGCCGGGu -3' miRNA: 3'- uGUCGG---------------UCUAG--CGCCA----CUGGUGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 103928 | 0.69 | 0.697562 |
Target: 5'- -aAGcCCAGGUCcucgagcagGCGGUuauagagGGCCGCCGGGg -3' miRNA: 3'- ugUC-GGUCUAG---------CGCCA-------CUGGUGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 24670 | 0.69 | 0.698554 |
Target: 5'- uGCAGCagCAGGUCGCGGcacggGAucCCGCgAGGc -3' miRNA: 3'- -UGUCG--GUCUAGCGCCa----CU--GGUGgUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 75888 | 0.69 | 0.698554 |
Target: 5'- -gGGCCAgGGUCGCGGUcuuggcguucGCCGCgAGGg -3' miRNA: 3'- ugUCGGU-CUAGCGCCAc---------UGGUGgUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 83733 | 0.69 | 0.698554 |
Target: 5'- --uGCCGGGgaCGCGGgcccgGcuGCCGCCAGGg -3' miRNA: 3'- uguCGGUCUa-GCGCCa----C--UGGUGGUCC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 100775 | 0.69 | 0.698554 |
Target: 5'- cGCAGUCGccGAUCguGCGGUGGCgGCCucGGg -3' miRNA: 3'- -UGUCGGU--CUAG--CGCCACUGgUGGu-CC- -5' |
|||||||
21380 | 5' | -57.3 | NC_004812.1 | + | 148439 | 0.69 | 0.698554 |
Target: 5'- --cGUgGGGUCGCGGUGAgucccucgcCCGCuCGGGg -3' miRNA: 3'- uguCGgUCUAGCGCCACU---------GGUG-GUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home