miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 37743 0.7 0.678619
Target:  5'- gGCGGCCc--UCGCGGUcggcgaggcGGCCcGCCGGGg -3'
miRNA:   3'- -UGUCGGucuAGCGCCA---------CUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 47467 0.69 0.728029
Target:  5'- gACGGCCGGuccGUCGCc---GCCGCCGGGu -3'
miRNA:   3'- -UGUCGGUC---UAGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30078 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91536 0.74 0.41789
Target:  5'- cGCGGCCAGggCgGCGGcGGCCGCCGa- -3'
miRNA:   3'- -UGUCGGUCuaG-CGCCaCUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 153147 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 76373 0.72 0.568017
Target:  5'- gACcGCgGGAUCGUGGUcACCgggGCCAGGa -3'
miRNA:   3'- -UGuCGgUCUAGCGCCAcUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70477 0.71 0.598036
Target:  5'- cCAGCCAgcaacggcGAUCgGCGGUGACC--CAGGg -3'
miRNA:   3'- uGUCGGU--------CUAG-CGCCACUGGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 39255 0.7 0.638367
Target:  5'- cGCGGCCGccccaccgCGuCGGcGGCCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcua-----GC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 53041 0.7 0.648457
Target:  5'- uGCGcGCCAGcaCGCGGcagcUGcACCGCCAGGc -3'
miRNA:   3'- -UGU-CGGUCuaGCGCC----AC-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 68953 0.7 0.667586
Target:  5'- gAUGGCCgcgagggucgaguGGGUCGUGGUGGucugcggguUCACCAGGu -3'
miRNA:   3'- -UGUCGG-------------UCUAGCGCCACU---------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 139745 0.67 0.82727
Target:  5'- cGCcGaCCAGGUCGCGGUcccccgcGACCGCgcgccuaAGGg -3'
miRNA:   3'- -UGuC-GGUCUAGCGCCA-------CUGGUGg------UCC- -5'
21380 5' -57.3 NC_004812.1 + 137804 0.67 0.81971
Target:  5'- gGCGGCgAGGgcgcCGCGGagcaggcccccUGGCC-CCGGGa -3'
miRNA:   3'- -UGUCGgUCUa---GCGCC-----------ACUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 87068 0.69 0.737705
Target:  5'- cGCGGgCAGGggCGCGGgggGGCgGCCGGa -3'
miRNA:   3'- -UGUCgGUCUa-GCGCCa--CUGgUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 141783 0.68 0.747291
Target:  5'- aACGGCCg---CGCGGgggggcgGGCCGCgCGGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCCa------CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 31000 0.68 0.76616
Target:  5'- -gGGCCGGGgcgcgCGCGG-GGCCGggagcccgcCCGGGa -3'
miRNA:   3'- ugUCGGUCUa----GCGCCaCUGGU---------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 107583 0.68 0.76988
Target:  5'- gGCGGCgCGGuugaccucguccgCGUGGgcccGGCCGCCGGGg -3'
miRNA:   3'- -UGUCG-GUCua-----------GCGCCa---CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 124503 0.68 0.784565
Target:  5'- --cGCCAGggCGCcaUGGCCcACCAGGc -3'
miRNA:   3'- uguCGGUCuaGCGccACUGG-UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 16758 0.68 0.790884
Target:  5'- uCAGUCGGGgggCGCGGgGGCCGgagggugagggggcCCAGGu -3'
miRNA:   3'- uGUCGGUCUa--GCGCCaCUGGU--------------GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153357 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 71719 0.67 0.811153
Target:  5'- -gGGCCGGGaagUCGCucgGGUGGCggaggGCCAGGa -3'
miRNA:   3'- ugUCGGUCU---AGCG---CCACUGg----UGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.