miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 133531 0.69 0.737705
Target:  5'- aGCAGC---GUCGCgugGGUGGCCACCAugcGGg -3'
miRNA:   3'- -UGUCGgucUAGCG---CCACUGGUGGU---CC- -5'
21380 5' -57.3 NC_004812.1 + 63538 0.68 0.756779
Target:  5'- -gAGCUccaGGGUCGUGGguccGGCCGgCAGGg -3'
miRNA:   3'- ugUCGG---UCUAGCGCCa---CUGGUgGUCC- -5'
21380 5' -57.3 NC_004812.1 + 37193 0.68 0.76616
Target:  5'- cACGGCCAGGgggaGCGGcGcCC-CCGGGc -3'
miRNA:   3'- -UGUCGGUCUag--CGCCaCuGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91779 0.68 0.775425
Target:  5'- gGCGGCCAugcGGUCGCccaUGGCCGUCAGGc -3'
miRNA:   3'- -UGUCGGU---CUAGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 38525 0.68 0.784565
Target:  5'- --cGCCGGAgacgCGCGGcGGCCGgggUCGGGg -3'
miRNA:   3'- uguCGGUCUa---GCGCCaCUGGU---GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 153357 0.67 0.801557
Target:  5'- gGCGGCgGGggCGCGGgcgccccUGGCgggCGCCGGGu -3'
miRNA:   3'- -UGUCGgUCuaGCGCC-------ACUG---GUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 71719 0.67 0.811153
Target:  5'- -gGGCCGGGaagUCGCucgGGUGGCggaggGCCAGGa -3'
miRNA:   3'- ugUCGGUCU---AGCG---CCACUGg----UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 68953 0.7 0.667586
Target:  5'- gAUGGCCgcgagggucgaguGGGUCGUGGUGGucugcggguUCACCAGGu -3'
miRNA:   3'- -UGUCGG-------------UCUAGCGCCACU---------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 53041 0.7 0.648457
Target:  5'- uGCGcGCCAGcaCGCGGcagcUGcACCGCCAGGc -3'
miRNA:   3'- -UGU-CGGUCuaGCGCC----AC-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 39255 0.7 0.638367
Target:  5'- cGCGGCCGccccaccgCGuCGGcGGCCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcua-----GC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 51576 0.67 0.828101
Target:  5'- cGCAGCCGGAggCGcCGGgucagucgGcACCGCgGGGc -3'
miRNA:   3'- -UGUCGGUCUa-GC-GCCa-------C-UGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 91315 0.67 0.83632
Target:  5'- gGCA-CCuGGUCGCGGcgGGCCAgCAGc -3'
miRNA:   3'- -UGUcGGuCUAGCGCCa-CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 89663 0.67 0.83632
Target:  5'- --cGCCgAGAUCGaGGUcGACCcCCGGGu -3'
miRNA:   3'- uguCGG-UCUAGCgCCA-CUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 75272 0.67 0.844357
Target:  5'- -gGGCCuGcgCGCcGUGAUCACCgAGGc -3'
miRNA:   3'- ugUCGGuCuaGCGcCACUGGUGG-UCC- -5'
21380 5' -57.3 NC_004812.1 + 150393 0.67 0.844357
Target:  5'- cGCGGCggCAGGg-GCGGcguccgcgGGCCGCCGGGc -3'
miRNA:   3'- -UGUCG--GUCUagCGCCa-------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30078 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91536 0.74 0.41789
Target:  5'- cGCGGCCAGggCgGCGGcGGCCGCCGa- -3'
miRNA:   3'- -UGUCGGUCuaG-CGCCaCUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 153147 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 76373 0.72 0.568017
Target:  5'- gACcGCgGGAUCGUGGUcACCgggGCCAGGa -3'
miRNA:   3'- -UGuCGgUCUAGCGCCAcUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70477 0.71 0.598036
Target:  5'- cCAGCCAgcaacggcGAUCgGCGGUGACC--CAGGg -3'
miRNA:   3'- uGUCGGU--------CUAG-CGCCACUGGugGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.