miRNA display CGI


Results 101 - 120 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 113761 0.67 0.843561
Target:  5'- cGCGGCCAGGUa---GUGGCCACCcuugugcGGGu -3'
miRNA:   3'- -UGUCGGUCUAgcgcCACUGGUGG-------UCC- -5'
21380 5' -57.3 NC_004812.1 + 55536 0.67 0.844357
Target:  5'- --cGCCAcgcggCGCGccucacguacGUGGCCACCGGGg -3'
miRNA:   3'- uguCGGUcua--GCGC----------CACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 541 0.66 0.852207
Target:  5'- -gAGCCGGAagGCGGcGACgCGCCGc- -3'
miRNA:   3'- ugUCGGUCUagCGCCaCUG-GUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 107198 0.66 0.852207
Target:  5'- gGCGGCCcGGGgccacggCGCGG--GCCGCCuGGg -3'
miRNA:   3'- -UGUCGG-UCUa------GCGCCacUGGUGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 29953 0.66 0.859863
Target:  5'- -gGGCCGGGcUCGC----GCCGCCGGGg -3'
miRNA:   3'- ugUCGGUCU-AGCGccacUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91779 0.68 0.775425
Target:  5'- gGCGGCCAugcGGUCGCccaUGGCCGUCAGGc -3'
miRNA:   3'- -UGUCGGU---CUAGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 37193 0.68 0.76616
Target:  5'- cACGGCCAGGgggaGCGGcGcCC-CCGGGc -3'
miRNA:   3'- -UGUCGGUCUag--CGCCaCuGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 30078 0.75 0.384209
Target:  5'- gGCGGCCGGGcccUCGCGGgggcgcGGCCccgGCCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AGCGCCa-----CUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 91536 0.74 0.41789
Target:  5'- cGCGGCCAGggCgGCGGcGGCCGCCGa- -3'
miRNA:   3'- -UGUCGGUCuaG-CGCCaCUGGUGGUcc -5'
21380 5' -57.3 NC_004812.1 + 153147 0.73 0.480915
Target:  5'- gGCGGCgGGG-CGCGGgcggggGGCCACgGGGa -3'
miRNA:   3'- -UGUCGgUCUaGCGCCa-----CUGGUGgUCC- -5'
21380 5' -57.3 NC_004812.1 + 76373 0.72 0.568017
Target:  5'- gACcGCgGGAUCGUGGUcACCgggGCCAGGa -3'
miRNA:   3'- -UGuCGgUCUAGCGCCAcUGG---UGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 70477 0.71 0.598036
Target:  5'- cCAGCCAgcaacggcGAUCgGCGGUGACC--CAGGg -3'
miRNA:   3'- uGUCGGU--------CUAG-CGCCACUGGugGUCC- -5'
21380 5' -57.3 NC_004812.1 + 39255 0.7 0.638367
Target:  5'- cGCGGCCGccccaccgCGuCGGcGGCCGCCGGGg -3'
miRNA:   3'- -UGUCGGUcua-----GC-GCCaCUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 53041 0.7 0.648457
Target:  5'- uGCGcGCCAGcaCGCGGcagcUGcACCGCCAGGc -3'
miRNA:   3'- -UGU-CGGUCuaGCGCC----AC-UGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 68953 0.7 0.667586
Target:  5'- gAUGGCCgcgagggucgaguGGGUCGUGGUGGucugcggguUCACCAGGu -3'
miRNA:   3'- -UGUCGG-------------UCUAGCGCCACU---------GGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 103802 0.69 0.688609
Target:  5'- cCAGCUGGGUCGCGccgacGUGACCACgguCAGc -3'
miRNA:   3'- uGUCGGUCUAGCGC-----CACUGGUG---GUCc -5'
21380 5' -57.3 NC_004812.1 + 3939 0.69 0.718273
Target:  5'- gGCGGCaCGGcgCGCGc-GGCCGCCAGc -3'
miRNA:   3'- -UGUCG-GUCuaGCGCcaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 2735 0.69 0.737705
Target:  5'- cGCGGCgCAGGUCGCGcGcggcgGGCCAgCGGa -3'
miRNA:   3'- -UGUCG-GUCUAGCGC-Ca----CUGGUgGUCc -5'
21380 5' -57.3 NC_004812.1 + 133531 0.69 0.737705
Target:  5'- aGCAGC---GUCGCgugGGUGGCCACCAugcGGg -3'
miRNA:   3'- -UGUCGgucUAGCG---CCACUGGUGGU---CC- -5'
21380 5' -57.3 NC_004812.1 + 63538 0.68 0.756779
Target:  5'- -gAGCUccaGGGUCGUGGguccGGCCGgCAGGg -3'
miRNA:   3'- ugUCGG---UCUAGCGCCa---CUGGUgGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.