miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 40543 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 96839 0.66 0.671678
Target:  5'- cUACCUCGAGc-GGUGCGaCGGcGGGGuGAu -3'
miRNA:   3'- -GUGGAGUUCcaCCGCGC-GCU-CCCC-CU- -5'
21381 3' -61.5 NC_004812.1 + 113241 0.66 0.700911
Target:  5'- gGCCgguGGGccGCuCGCGGGGGGGGu -3'
miRNA:   3'- gUGGaguUCCacCGcGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 84000 0.66 0.64119
Target:  5'- -uCCUUggGG-GGCGuCGCGGcccggcccuccuuGGGGGGc -3'
miRNA:   3'- guGGAGuuCCaCCGC-GCGCU-------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40700 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 137967 0.66 0.681463
Target:  5'- gGCCccucgUCGGGGcGGgGuCGgGGGGGGGGg -3'
miRNA:   3'- gUGG-----AGUUCCaCCgC-GCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148496 0.66 0.691209
Target:  5'- gGCUuuUCGGGGUuccgGGcCGgGgGAGGGGGGg -3'
miRNA:   3'- gUGG--AGUUCCA----CC-GCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 124618 0.66 0.699943
Target:  5'- cCGCCUCc--GUGGCGgaccugcCGCGGccGGGGGGc -3'
miRNA:   3'- -GUGGAGuucCACCGC-------GCGCU--CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 110634 0.66 0.691209
Target:  5'- gACCUCcgcgcGG-GGCGgagaCGCGGGcGGGGAg -3'
miRNA:   3'- gUGGAGuu---CCaCCGC----GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40660 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40582 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155685 0.67 0.583158
Target:  5'- gCGCCggcGGGcucGGCGCGCGcgagggcguGGGGGAg -3'
miRNA:   3'- -GUGGaguUCCa--CCGCGCGCu--------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 70908 0.67 0.583158
Target:  5'- gAUCUCGcgcGGG-GGgGCGgGAGGuGGGAu -3'
miRNA:   3'- gUGGAGU---UCCaCCgCGCgCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 155047 0.67 0.632317
Target:  5'- nACC-CGGGcGgcucGCGCGCGuAGGGGGGa -3'
miRNA:   3'- gUGGaGUUC-Cac--CGCGCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148225 0.67 0.632317
Target:  5'- nGCCgcuuGGGUGGcCG-GCG-GGGGGAg -3'
miRNA:   3'- gUGGagu-UCCACC-GCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 154172 0.67 0.618516
Target:  5'- gCGCCuaUCGGGGaugagaaaccgcaGGgGgGCGGGGGGGAc -3'
miRNA:   3'- -GUGG--AGUUCCa------------CCgCgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29539 0.67 0.632317
Target:  5'- nACC-CGGGcGgcucGCGCGCGuAGGGGGGa -3'
miRNA:   3'- gUGGaGUUC-Cac--CGCGCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 130544 0.67 0.622458
Target:  5'- gACCcCGggccGGG-GGCGCGCGAGGGc-- -3'
miRNA:   3'- gUGGaGU----UCCaCCGCGCGCUCCCccu -5'
21381 3' -61.5 NC_004812.1 + 122242 0.67 0.622458
Target:  5'- --gCUCGGcGGcGGgGCGCGGGcGGGGGg -3'
miRNA:   3'- gugGAGUU-CCaCCgCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 127002 0.67 0.632317
Target:  5'- -----gAAGGUGGgGUaggGCGGGGGGGGg -3'
miRNA:   3'- guggagUUCCACCgCG---CGCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.