miRNA display CGI


Results 61 - 80 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 104030 0.67 0.592949
Target:  5'- gGCCUCGGGGccGuCGCgGCGucGGGGAg -3'
miRNA:   3'- gUGGAGUUCCacC-GCG-CGCucCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35470 0.67 0.592949
Target:  5'- gCGCCgCGGcGUcGGCGCGCGAGauccccgaGGGGAu -3'
miRNA:   3'- -GUGGaGUUcCA-CCGCGCGCUC--------CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 125296 0.67 0.592949
Target:  5'- gCGCCgcgCGcggaAGGccuGCGCGCGuGGGGGGc -3'
miRNA:   3'- -GUGGa--GU----UCCac-CGCGCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155685 0.67 0.583158
Target:  5'- gCGCCggcGGGcucGGCGCGCGcgagggcguGGGGGAg -3'
miRNA:   3'- -GUGGaguUCCa--CCGCGCGCu--------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148225 0.67 0.632317
Target:  5'- nGCCgcuuGGGUGGcCG-GCG-GGGGGAg -3'
miRNA:   3'- gUGGagu-UCCACC-GCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155047 0.67 0.632317
Target:  5'- nACC-CGGGcGgcucGCGCGCGuAGGGGGGa -3'
miRNA:   3'- gUGGaGUUC-Cac--CGCGCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 123271 0.67 0.618516
Target:  5'- gCGCCuaUCGGGGaugagaaaccgcaGGgGgGCGGGGGGGAc -3'
miRNA:   3'- -GUGG--AGUUCCa------------CCgCgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 107229 0.67 0.583158
Target:  5'- gGCgUCGAGGcacagGGCG-GCGAGgccGGGGAa -3'
miRNA:   3'- gUGgAGUUCCa----CCGCgCGCUC---CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 13388 0.67 0.583158
Target:  5'- gCGCCg-GGGGUcgGGgGCGCGGcGGGGGu -3'
miRNA:   3'- -GUGGagUUCCA--CCgCGCGCU-CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 156197 0.67 0.592949
Target:  5'- gCGCCgcgCGcggaAGGccuGCGCGCGuGGGGGGc -3'
miRNA:   3'- -GUGGa--GU----UCCac-CGCGCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35527 0.67 0.601785
Target:  5'- -cCCUUAGGGgcgGGggggcgggacgccCGCGCGGGGaGGGGc -3'
miRNA:   3'- guGGAGUUCCa--CC-------------GCGCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 37031 0.67 0.602768
Target:  5'- gCugC-CGGGGaaGGCGgGCGAGGGGa- -3'
miRNA:   3'- -GugGaGUUCCa-CCGCgCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 31144 0.67 0.602768
Target:  5'- gGCC-CAAGGcucccGCGCGgGAGGaGGGGg -3'
miRNA:   3'- gUGGaGUUCCac---CGCGCgCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 10134 0.67 0.606701
Target:  5'- aGCa--AAGGUGGCagggagcgacagacgGCGaCGGGGGGGGg -3'
miRNA:   3'- gUGgagUUCCACCG---------------CGC-GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 153143 0.67 0.622458
Target:  5'- --gCUCGGcGGcGGgGCGCGGGcGGGGGg -3'
miRNA:   3'- gugGAGUU-CCaCCgCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 127002 0.67 0.632317
Target:  5'- -----gAAGGUGGgGUaggGCGGGGGGGGg -3'
miRNA:   3'- guggagUUCCACCgCG---CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29539 0.67 0.632317
Target:  5'- nACC-CGGGcGgcucGCGCGCGuAGGGGGGa -3'
miRNA:   3'- gUGGaGUUC-Cac--CGCGCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 154172 0.67 0.618516
Target:  5'- gCGCCuaUCGGGGaugagaaaccgcaGGgGgGCGGGGGGGAc -3'
miRNA:   3'- -GUGG--AGUUCCa------------CCgCgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 5035 0.67 0.622458
Target:  5'- gACCcCGggccGGG-GGCGCGCGAGGGc-- -3'
miRNA:   3'- gUGGaGU----UCCaCCGCGCGCUCCCccu -5'
21381 3' -61.5 NC_004812.1 + 51511 0.68 0.534805
Target:  5'- gGCCgcgCAGGGUcccgcccccGGCGCaGCGGcgccGGGGGGc -3'
miRNA:   3'- gUGGa--GUUCCA---------CCGCG-CGCU----CCCCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.