miRNA display CGI


Results 101 - 120 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 36893 0.68 0.525294
Target:  5'- gCGCCg-AGGGUcGGgGgGaCGAGGGGGAc -3'
miRNA:   3'- -GUGGagUUCCA-CCgCgC-GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35529 0.68 0.525294
Target:  5'- -uCCgUCAGcaUGGCGCGCGGGGGGc- -3'
miRNA:   3'- guGG-AGUUccACCGCGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 17551 0.68 0.572425
Target:  5'- aGCCUCGAGugcGUGGCGUauaacccGC-AGGGGGu -3'
miRNA:   3'- gUGGAGUUC---CACCGCG-------CGcUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 30172 0.68 0.525294
Target:  5'- aACCU--AGGUGccGCGCGCGGcugccuGGGGGGc -3'
miRNA:   3'- gUGGAguUCCAC--CGCGCGCU------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 116202 0.68 0.5234
Target:  5'- cCGCCggaggaaaauGGGgaggGGCGCGCaaauGGGGGGGGg -3'
miRNA:   3'- -GUGGagu-------UCCa---CCGCGCG----CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 32804 0.68 0.563679
Target:  5'- gGCCUCGAcgcGGaagccgGGCGCGgaCGAGuGGGGGc -3'
miRNA:   3'- gUGGAGUU---CCa-----CCGCGC--GCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35853 0.68 0.563679
Target:  5'- aGCagcgCGGGGUcgcuGGCGCagGCGGGGGGGu -3'
miRNA:   3'- gUGga--GUUCCA----CCGCG--CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 7544 0.69 0.506471
Target:  5'- cCGCC-CAcucGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGU---UCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 23250 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 19874 0.69 0.515848
Target:  5'- -cCCgggCGucGUGG-GCGCGGGGGGGGu -3'
miRNA:   3'- guGGa--GUucCACCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 23198 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 23224 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 22990 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 29713 0.69 0.515848
Target:  5'- gGCCgCGaagagcGGGccuUGGUGCGCGAGGGcGGGc -3'
miRNA:   3'- gUGGaGU------UCC---ACCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 153119 0.69 0.506471
Target:  5'- cCGCC-CcGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGuUCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148499 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 36530 0.69 0.487023
Target:  5'- gCGgCUCGGGGgccgGGCccggggucgccggGCGCGAGGGGa- -3'
miRNA:   3'- -GUgGAGUUCCa---CCG-------------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 155221 0.69 0.515848
Target:  5'- gGCCgCGaagagcGGGccuUGGUGCGCGAGGGcGGGc -3'
miRNA:   3'- gUGGaGU------UCC---ACCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 85121 0.69 0.515848
Target:  5'- gACCgcCAAcuaccGG-GGCGCGCGGGcGGGGGc -3'
miRNA:   3'- gUGGa-GUU-----CCaCCGCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 78605 0.69 0.515848
Target:  5'- uGCCUCGucGGUGGaaGCgGCGGcGGGGGGc -3'
miRNA:   3'- gUGGAGUu-CCACCg-CG-CGCU-CCCCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.