miRNA display CGI


Results 101 - 120 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 148732 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 19874 0.69 0.515848
Target:  5'- -cCCgggCGucGUGG-GCGCGGGGGGGGu -3'
miRNA:   3'- guGGa--GUucCACCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29713 0.69 0.515848
Target:  5'- gGCCgCGaagagcGGGccuUGGUGCGCGAGGGcGGGc -3'
miRNA:   3'- gUGGaGU------UCC---ACCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 100824 0.69 0.469737
Target:  5'- -gUCUCGGGGgcgGGCGcCGCGAcgccGGGGAg -3'
miRNA:   3'- guGGAGUUCCa--CCGC-GCGCUc---CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 23146 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 23120 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 23198 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 36530 0.69 0.487023
Target:  5'- gCGgCUCGGGGgccgGGCccggggucgccggGCGCGAGGGGa- -3'
miRNA:   3'- -GUgGAGUUCCa---CCG-------------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 30473 0.69 0.473351
Target:  5'- aGCCUCGGGGuugcagcccgcgugcUcgcGGCGCGgGGGaGGGGAc -3'
miRNA:   3'- gUGGAGUUCC---------------A---CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29509 0.69 0.469737
Target:  5'- gCGCCcgGAGGcgGGgagcCGUGCGGGGGGGAc -3'
miRNA:   3'- -GUGGagUUCCa-CC----GCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 23302 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 23276 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148681 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGa -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148706 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 145741 0.69 0.478797
Target:  5'- gCGCCcgcgggUCGGGG-GGCucgucggucgucGCGCGGGGGGGu -3'
miRNA:   3'- -GUGG------AGUUCCaCCG------------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 152820 0.69 0.478797
Target:  5'- gGCCU-GAGGUcgGGCcugaGCGcCGGGGGGGAc -3'
miRNA:   3'- gUGGAgUUCCA--CCG----CGC-GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 23224 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 23250 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 51511 0.68 0.534805
Target:  5'- gGCCgcgCAGGGUcccgcccccGGCGCaGCGGcgccGGGGGGc -3'
miRNA:   3'- gUGGa--GUUCCA---------CCGCG-CGCU----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 57242 0.68 0.534805
Target:  5'- gACCgagCGuGGgcgGGCGCuGgGGGGGGGGg -3'
miRNA:   3'- gUGGa--GUuCCa--CCGCG-CgCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.