miRNA display CGI


Results 101 - 120 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 152820 0.69 0.478797
Target:  5'- gGCCU-GAGGUcgGGCcugaGCGcCGGGGGGGAc -3'
miRNA:   3'- gUGGAgUUCCA--CCG----CGC-GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 105410 0.69 0.478797
Target:  5'- aACCaCGuGG-GG-GCGCGAGGGGGGa -3'
miRNA:   3'- gUGGaGUuCCaCCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 121919 0.69 0.478797
Target:  5'- gGCCU-GAGGUcgGGCcugaGCGcCGGGGGGGAc -3'
miRNA:   3'- gUGGAgUUCCA--CCG----CGC-GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 145741 0.69 0.478797
Target:  5'- gCGCCcgcgggUCGGGG-GGCucgucggucgucGCGCGGGGGGGu -3'
miRNA:   3'- -GUGG------AGUUCCaCCG------------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 5629 0.69 0.487023
Target:  5'- gCGgCUCGGGGgccgGGCccggggucgccggGCGCGAGGGGa- -3'
miRNA:   3'- -GUgGAGUUCCa---CCG-------------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 36530 0.69 0.487023
Target:  5'- gCGgCUCGGGGgccgGGCccggggucgccggGCGCGAGGGGa- -3'
miRNA:   3'- -GUgGAGUUCCa---CCG-------------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 82007 0.69 0.497167
Target:  5'- aACC-CGGGGUcGGagaGCacgGCGGGGGGGAc -3'
miRNA:   3'- gUGGaGUUCCA-CCg--CG---CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 135218 0.69 0.497167
Target:  5'- -uCCUCGucgucuguguuGGGgccgGGCGgGCG-GGGGGAa -3'
miRNA:   3'- guGGAGU-----------UCCa---CCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 72493 0.69 0.497167
Target:  5'- gCGCCUCGGGGUcggggGGCGCGCcgccGccGGGGu -3'
miRNA:   3'- -GUGGAGUUCCA-----CCGCGCG----CucCCCCu -5'
21381 3' -61.5 NC_004812.1 + 7544 0.69 0.506471
Target:  5'- cCGCC-CAcucGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGU---UCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 153119 0.69 0.506471
Target:  5'- cCGCC-CcGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGuUCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 133052 0.69 0.506471
Target:  5'- cCGCC-CAcucGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGU---UCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 122218 0.69 0.506471
Target:  5'- cCGCC-CcGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGuUCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155221 0.69 0.515848
Target:  5'- gGCCgCGaagagcGGGccuUGGUGCGCGAGGGcGGGc -3'
miRNA:   3'- gUGGaGU------UCC---ACCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 85121 0.69 0.515848
Target:  5'- gACCgcCAAcuaccGG-GGCGCGCGGGcGGGGGc -3'
miRNA:   3'- gUGGa-GUU-----CCaCCGCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 19874 0.69 0.515848
Target:  5'- -cCCgggCGucGUGG-GCGCGGGGGGGGu -3'
miRNA:   3'- guGGa--GUucCACCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 78605 0.69 0.515848
Target:  5'- uGCCUCGucGGUGGaaGCgGCGGcGGGGGGc -3'
miRNA:   3'- gUGGAGUu-CCACCg-CG-CGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29713 0.69 0.515848
Target:  5'- gGCCgCGaagagcGGGccuUGGUGCGCGAGGGcGGGc -3'
miRNA:   3'- gUGGaGU------UCC---ACCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 116202 0.68 0.5234
Target:  5'- cCGCCggaggaaaauGGGgaggGGCGCGCaaauGGGGGGGGg -3'
miRNA:   3'- -GUGGagu-------UCCa---CCGCGCG----CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 73181 0.68 0.525294
Target:  5'- gGCCgguaCAGGGcgugGGCGgGCGGGGccGGGAc -3'
miRNA:   3'- gUGGa---GUUCCa---CCGCgCGCUCC--CCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.