miRNA display CGI


Results 141 - 160 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 99782 0.68 0.563679
Target:  5'- -uCCUCGAGuacGCGCaGCgGAGGGGGAg -3'
miRNA:   3'- guGGAGUUCcacCGCG-CG-CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35853 0.68 0.563679
Target:  5'- aGCagcgCGGGGUcgcuGGCGCagGCGGGGGGGu -3'
miRNA:   3'- gUGga--GUUCCA----CCGCG--CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 17551 0.68 0.572425
Target:  5'- aGCCUCGAGugcGUGGCGUauaacccGC-AGGGGGu -3'
miRNA:   3'- gUGGAGUUC---CACCGCG-------CGcUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 21964 0.68 0.573399
Target:  5'- aCGCCgu--GGUGcuCGCGCGGGGaGGGGg -3'
miRNA:   3'- -GUGGaguuCCACc-GCGCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 56720 0.68 0.573399
Target:  5'- aCGCC-CGAGGgacucgugGGCGCGgcCGuGGGGGc -3'
miRNA:   3'- -GUGGaGUUCCa-------CCGCGC--GCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 68167 0.68 0.573399
Target:  5'- -cCCggCAGGGUcGGCGgcCGCGGGcGGGGGc -3'
miRNA:   3'- guGGa-GUUCCA-CCGC--GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 70908 0.67 0.583158
Target:  5'- gAUCUCGcgcGGG-GGgGCGgGAGGuGGGAu -3'
miRNA:   3'- gUGGAGU---UCCaCCgCGCgCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 107229 0.67 0.583158
Target:  5'- gGCgUCGAGGcacagGGCG-GCGAGgccGGGGAa -3'
miRNA:   3'- gUGgAGUUCCa----CCGCgCGCUC---CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 13388 0.67 0.583158
Target:  5'- gCGCCg-GGGGUcgGGgGCGCGGcGGGGGu -3'
miRNA:   3'- -GUGGagUUCCA--CCgCGCGCU-CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 155685 0.67 0.583158
Target:  5'- gCGCCggcGGGcucGGCGCGCGcgagggcguGGGGGAg -3'
miRNA:   3'- -GUGGaguUCCa--CCGCGCGCu--------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 83936 0.67 0.587071
Target:  5'- uGCCguguugucuuuuggCAcAGGUGGgGCGCGAucgucccuGGGGGGc -3'
miRNA:   3'- gUGGa-------------GU-UCCACCgCGCGCU--------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 104030 0.67 0.592949
Target:  5'- gGCCUCGGGGccGuCGCgGCGucGGGGAg -3'
miRNA:   3'- gUGGAGUUCCacC-GCG-CGCucCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35470 0.67 0.592949
Target:  5'- gCGCCgCGGcGUcGGCGCGCGAGauccccgaGGGGAu -3'
miRNA:   3'- -GUGGaGUUcCA-CCGCGCGCUC--------CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 125296 0.67 0.592949
Target:  5'- gCGCCgcgCGcggaAGGccuGCGCGCGuGGGGGGc -3'
miRNA:   3'- -GUGGa--GU----UCCac-CGCGCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 156197 0.67 0.592949
Target:  5'- gCGCCgcgCGcggaAGGccuGCGCGCGuGGGGGGc -3'
miRNA:   3'- -GUGGa--GU----UCCac-CGCGCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35527 0.67 0.601785
Target:  5'- -cCCUUAGGGgcgGGggggcgggacgccCGCGCGGGGaGGGGc -3'
miRNA:   3'- guGGAGUUCCa--CC-------------GCGCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 4626 0.67 0.601785
Target:  5'- -cCCUUAGGGgcgGGggggcgggacgccCGCGCGGGGaGGGGc -3'
miRNA:   3'- guGGAGUUCCa--CC-------------GCGCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 6130 0.67 0.602768
Target:  5'- gCugC-CGGGGaaGGCGgGCGAGGGGa- -3'
miRNA:   3'- -GugGaGUUCCa-CCGCgCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 243 0.67 0.602768
Target:  5'- gGCC-CAAGGcucccGCGCGgGAGGaGGGGg -3'
miRNA:   3'- gUGGaGUUCCac---CGCGCgCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 37031 0.67 0.602768
Target:  5'- gCugC-CGGGGaaGGCGgGCGAGGGGa- -3'
miRNA:   3'- -GugGaGUUCCa-CCGCgCGCUCCCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.