miRNA display CGI


Results 81 - 100 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 56720 0.68 0.573399
Target:  5'- aCGCC-CGAGGgacucgugGGCGCGgcCGuGGGGGc -3'
miRNA:   3'- -GUGGaGUUCCa-------CCGCGC--GCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 68167 0.68 0.573399
Target:  5'- -cCCggCAGGGUcGGCGgcCGCGGGcGGGGGc -3'
miRNA:   3'- guGGa-GUUCCA-CCGC--GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 17551 0.68 0.572425
Target:  5'- aGCCUCGAGugcGUGGCGUauaacccGC-AGGGGGu -3'
miRNA:   3'- gUGGAGUUC---CACCGCG-------CGcUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 99782 0.68 0.563679
Target:  5'- -uCCUCGAGuacGCGCaGCgGAGGGGGAg -3'
miRNA:   3'- guGGAGUUCcacCGCG-CG-CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 37420 0.68 0.563679
Target:  5'- cCACCaggagCAGGGgggGGCGgGgggcCGAGGGGGc -3'
miRNA:   3'- -GUGGa----GUUCCa--CCGCgC----GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 35853 0.68 0.563679
Target:  5'- aGCagcgCGGGGUcgcuGGCGCagGCGGGGGGGu -3'
miRNA:   3'- gUGga--GUUCCA----CCGCG--CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 102257 0.68 0.563679
Target:  5'- aCACCU-GGGGUcGGCGaG-GAGGGGGGa -3'
miRNA:   3'- -GUGGAgUUCCA-CCGCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 6519 0.68 0.563679
Target:  5'- cCACCaggagCAGGGgggGGCGgGgggcCGAGGGGGc -3'
miRNA:   3'- -GUGGa----GUUCCa--CCGCgC----GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 32804 0.68 0.563679
Target:  5'- gGCCUCGAcgcGGaagccgGGCGCGgaCGAGuGGGGGc -3'
miRNA:   3'- gUGGAGUU---CCa-----CCGCGC--GCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 68221 0.68 0.554003
Target:  5'- gGCCggCcGGG-GGUGCGCGGGGGccGGGg -3'
miRNA:   3'- gUGGa-GuUCCaCCGCGCGCUCCC--CCU- -5'
21381 3' -61.5 NC_004812.1 + 30033 0.68 0.554003
Target:  5'- -cCCagGAGGgcgggaggGGCGgGgGAGGGGGGa -3'
miRNA:   3'- guGGagUUCCa-------CCGCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155542 0.68 0.554003
Target:  5'- -cCCagGAGGgcgggaggGGCGgGgGAGGGGGGa -3'
miRNA:   3'- guGGagUUCCa-------CCGCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 103490 0.68 0.554003
Target:  5'- cCACCgUCGgccgccGGGUGaGCGCGCGGaugcucGGGGAc -3'
miRNA:   3'- -GUGG-AGU------UCCAC-CGCGCGCUc-----CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29897 0.68 0.553038
Target:  5'- cCACCUCGugcAGGUGGgccgcgaUGCGCGGcccgcGGGuGGAg -3'
miRNA:   3'- -GUGGAGU---UCCACC-------GCGCGCU-----CCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 28938 0.68 0.544376
Target:  5'- cCGCCUgGAGGUGGCcgccgcCGCGAGccccgcccgcGGGGc -3'
miRNA:   3'- -GUGGAgUUCCACCGc-----GCGCUC----------CCCCu -5'
21381 3' -61.5 NC_004812.1 + 51511 0.68 0.534805
Target:  5'- gGCCgcgCAGGGUcccgcccccGGCGCaGCGGcgccGGGGGGc -3'
miRNA:   3'- gUGGa--GUUCCA---------CCGCG-CGCU----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 57242 0.68 0.534805
Target:  5'- gACCgagCGuGGgcgGGCGCuGgGGGGGGGGg -3'
miRNA:   3'- gUGGa--GUuCCa--CCGCG-CgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 120364 0.68 0.534805
Target:  5'- aACC-CGcGGgGGCGCGCGGccGGGGGc -3'
miRNA:   3'- gUGGaGUuCCaCCGCGCGCU--CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 11302 0.68 0.534805
Target:  5'- gCGCCgCGcGG-GGCGcCGCGGGGcGGGGg -3'
miRNA:   3'- -GUGGaGUuCCaCCGC-GCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 96315 0.68 0.534805
Target:  5'- gGCCccCAAGGgGGgGCGCGAcGGcGGGGc -3'
miRNA:   3'- gUGGa-GUUCCaCCgCGCGCU-CC-CCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.