miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 30172 0.68 0.525294
Target:  5'- aACCU--AGGUGccGCGCGCGGcugccuGGGGGGc -3'
miRNA:   3'- gUGGAguUCCAC--CGCGCGCU------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 30350 0.74 0.264834
Target:  5'- gCGCCggGAGGcgaGGCGCGCGcggcGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCa--CCGCGCGCu---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 30422 0.72 0.345822
Target:  5'- gCACgUgAAGGUcagGGCGCggaGCGAGGGGGc -3'
miRNA:   3'- -GUGgAgUUCCA---CCGCG---CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 30473 0.69 0.473351
Target:  5'- aGCCUCGGGGuugcagcccgcgugcUcgcGGCGCGgGGGaGGGGAc -3'
miRNA:   3'- gUGGAGUUCC---------------A---CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 30985 0.66 0.652027
Target:  5'- gCACUcgCGAGGgacgggccggGGCGCGCGcGGGGc- -3'
miRNA:   3'- -GUGGa-GUUCCa---------CCGCGCGCuCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 31144 0.67 0.602768
Target:  5'- gGCC-CAAGGcucccGCGCGgGAGGaGGGGg -3'
miRNA:   3'- gUGGaGUUCCac---CGCGCgCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 32804 0.68 0.563679
Target:  5'- gGCCUCGAcgcGGaagccgGGCGCGgaCGAGuGGGGGc -3'
miRNA:   3'- gUGGAGUU---CCa-----CCGCGC--GCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 33971 0.73 0.28999
Target:  5'- aGCCUCGccgguGGGcGGCgggacgacgGCGUGGGGGGGAg -3'
miRNA:   3'- gUGGAGU-----UCCaCCG---------CGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 34429 0.7 0.417337
Target:  5'- uCGCCggggcgucgcgCGGGGUGGgaugguCGUGgGAGGGGGAa -3'
miRNA:   3'- -GUGGa----------GUUCCACC------GCGCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35470 0.67 0.592949
Target:  5'- gCGCCgCGGcGUcGGCGCGCGAGauccccgaGGGGAu -3'
miRNA:   3'- -GUGGaGUUcCA-CCGCGCGCUC--------CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 35527 0.67 0.601785
Target:  5'- -cCCUUAGGGgcgGGggggcgggacgccCGCGCGGGGaGGGGc -3'
miRNA:   3'- guGGAGUUCCa--CC-------------GCGCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 35529 0.68 0.525294
Target:  5'- -uCCgUCAGcaUGGCGCGCGGGGGGc- -3'
miRNA:   3'- guGG-AGUUccACCGCGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 35853 0.68 0.563679
Target:  5'- aGCagcgCGGGGUcgcuGGCGCagGCGGGGGGGu -3'
miRNA:   3'- gUGga--GUUCCA----CCGCG--CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 36530 0.69 0.487023
Target:  5'- gCGgCUCGGGGgccgGGCccggggucgccggGCGCGAGGGGa- -3'
miRNA:   3'- -GUgGAGUUCCa---CCG-------------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 36862 0.72 0.338439
Target:  5'- gGCC-CGGGGaGGC-CGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUUCCaCCGcGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 36888 0.66 0.642176
Target:  5'- gUACg-CGGGGUGGUagGCGcCGGGGGGcGAg -3'
miRNA:   3'- -GUGgaGUUCCACCG--CGC-GCUCCCC-CU- -5'
21381 3' -61.5 NC_004812.1 + 36893 0.68 0.525294
Target:  5'- gCGCCg-AGGGUcGGgGgGaCGAGGGGGAc -3'
miRNA:   3'- -GUGGagUUCCA-CCgCgC-GCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 37031 0.67 0.602768
Target:  5'- gCugC-CGGGGaaGGCGgGCGAGGGGa- -3'
miRNA:   3'- -GugGaGUUCCa-CCGCgCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 37420 0.68 0.563679
Target:  5'- cCACCaggagCAGGGgggGGCGgGgggcCGAGGGGGc -3'
miRNA:   3'- -GUGGa----GUUCCa--CCGCgC----GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 37588 0.7 0.460766
Target:  5'- gACgaCAGGG-GGCGUGUguguuGGGGGGGAg -3'
miRNA:   3'- gUGgaGUUCCaCCGCGCG-----CUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.