miRNA display CGI


Results 101 - 120 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 56577 0.7 0.443101
Target:  5'- aCGCgCUCGAGcGcGGCgauggcgccGCGCGGGGGGGu -3'
miRNA:   3'- -GUG-GAGUUC-CaCCG---------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 56720 0.68 0.573399
Target:  5'- aCGCC-CGAGGgacucgugGGCGCGgcCGuGGGGGc -3'
miRNA:   3'- -GUGGaGUUCCa-------CCGCGC--GCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 56991 0.66 0.652027
Target:  5'- gCACCUgCAGgcGGUGGUGaGCGGGGGccugcGGAu -3'
miRNA:   3'- -GUGGA-GUU--CCACCGCgCGCUCCC-----CCU- -5'
21381 3' -61.5 NC_004812.1 + 57242 0.68 0.534805
Target:  5'- gACCgagCGuGGgcgGGCGCuGgGGGGGGGGg -3'
miRNA:   3'- gUGGa--GUuCCa--CCGCG-CgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 59623 0.68 0.525294
Target:  5'- gGCgUgGGGGUGGgGCGgGAgcggccgcGGGGGAu -3'
miRNA:   3'- gUGgAgUUCCACCgCGCgCU--------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 60533 0.66 0.651042
Target:  5'- -cCCUCGAGGaccgUGuGCGCGCggaucgaGAGGGaGGGc -3'
miRNA:   3'- guGGAGUUCC----AC-CGCGCG-------CUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 64547 0.67 0.632317
Target:  5'- gGCCaUCAAGGUGGUGUGCaacucgguguacGGGuucacGGGGGu -3'
miRNA:   3'- gUGG-AGUUCCACCGCGCG------------CUC-----CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 68167 0.68 0.573399
Target:  5'- -cCCggCAGGGUcGGCGgcCGCGGGcGGGGGc -3'
miRNA:   3'- guGGa-GUUCCA-CCGC--GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 68221 0.68 0.554003
Target:  5'- gGCCggCcGGG-GGUGCGCGGGGGccGGGg -3'
miRNA:   3'- gUGGa-GuUCCaCCGCGCGCUCCC--CCU- -5'
21381 3' -61.5 NC_004812.1 + 70254 0.73 0.296565
Target:  5'- cCGCCg-GGGGUGGCGgauCGCGGuGGGGGGc -3'
miRNA:   3'- -GUGGagUUCCACCGC---GCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 70851 0.74 0.269105
Target:  5'- aCGCC-CAcaggagacgcggggGGcGUGGCuGCGCGGGGGGGGc -3'
miRNA:   3'- -GUGGaGU--------------UC-CACCG-CGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 70908 0.67 0.583158
Target:  5'- gAUCUCGcgcGGG-GGgGCGgGAGGuGGGAu -3'
miRNA:   3'- gUGGAGU---UCCaCCgCGCgCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 71132 0.82 0.071447
Target:  5'- gCGCCUCGGGGguucgggGGCGCGCGAguucgucGGGGGGc -3'
miRNA:   3'- -GUGGAGUUCCa------CCGCGCGCU-------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 71347 0.66 0.661863
Target:  5'- gGCUUCGAcGGgGGCGUGgGuAGGGaGGAa -3'
miRNA:   3'- gUGGAGUU-CCaCCGCGCgC-UCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 71793 0.7 0.433549
Target:  5'- -uCCgUCAGGGUgaucuGGCGCGUGAggugguggcggaaGGGGGAg -3'
miRNA:   3'- guGG-AGUUCCA-----CCGCGCGCU-------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 72300 0.7 0.463448
Target:  5'- gGCCggggCGGGGggacggaucgaucgGGCGCggccgggcgggccGCGGGGGGGAg -3'
miRNA:   3'- gUGGa---GUUCCa-------------CCGCG-------------CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 72493 0.69 0.497167
Target:  5'- gCGCCUCGGGGUcggggGGCGCGCcgccGccGGGGu -3'
miRNA:   3'- -GUGGAGUUCCA-----CCGCGCG----CucCCCCu -5'
21381 3' -61.5 NC_004812.1 + 73181 0.68 0.525294
Target:  5'- gGCCgguaCAGGGcgugGGCGgGCGGGGccGGGAc -3'
miRNA:   3'- gUGGa---GUUCCa---CCGCgCGCUCC--CCCU- -5'
21381 3' -61.5 NC_004812.1 + 74340 0.7 0.434412
Target:  5'- gCACCUggCGAGccugcGGCGCGCGcugguGGGGGAg -3'
miRNA:   3'- -GUGGA--GUUCca---CCGCGCGCu----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 74905 0.67 0.621472
Target:  5'- gCGCgUCcAGGcgcgcgugcaGGCGCGCGAgcgggucGGGGGAg -3'
miRNA:   3'- -GUGgAGuUCCa---------CCGCGCGCU-------CCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.