miRNA display CGI


Results 121 - 140 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 76168 0.66 0.700911
Target:  5'- -cCCUCuugcgggcggcuGGGGUGgGCG-GCGGGGaGGGAa -3'
miRNA:   3'- guGGAG------------UUCCAC-CGCgCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 76929 0.66 0.652027
Target:  5'- gCACCcCGAGGcgaGGUGgGCGGGGGcGAu -3'
miRNA:   3'- -GUGGaGUUCCa--CCGCgCGCUCCCcCU- -5'
21381 3' -61.5 NC_004812.1 + 78605 0.69 0.515848
Target:  5'- uGCCUCGucGGUGGaaGCgGCGGcGGGGGGc -3'
miRNA:   3'- gUGGAGUu-CCACCg-CG-CGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 80345 0.74 0.273432
Target:  5'- gCGCCgUCGAGGcggcgcgcgcgggccUGGcCGCcuGCGAGGGGGAg -3'
miRNA:   3'- -GUGG-AGUUCC---------------ACC-GCG--CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 82007 0.69 0.497167
Target:  5'- aACC-CGGGGUcGGagaGCacgGCGGGGGGGAc -3'
miRNA:   3'- gUGGaGUUCCA-CCg--CG---CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 82122 0.7 0.451886
Target:  5'- gCGCCgacgaCGGGGUGGCGgGUGccacGGGGGu -3'
miRNA:   3'- -GUGGa----GUUCCACCGCgCGCu---CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 83936 0.67 0.587071
Target:  5'- uGCCguguugucuuuuggCAcAGGUGGgGCGCGAucgucccuGGGGGGc -3'
miRNA:   3'- gUGGa-------------GU-UCCACCgCGCGCU--------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 84000 0.66 0.64119
Target:  5'- -uCCUUggGG-GGCGuCGCGGcccggcccuccuuGGGGGGc -3'
miRNA:   3'- guGGAGuuCCaCCGC-GCGCU-------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 85121 0.69 0.515848
Target:  5'- gACCgcCAAcuaccGG-GGCGCGCGGGcGGGGGc -3'
miRNA:   3'- gUGGa-GUU-----CCaCCGCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 85648 0.72 0.338439
Target:  5'- aCGCCUCGGGGcgcUGGUGC-CGGGGcGGGu -3'
miRNA:   3'- -GUGGAGUUCC---ACCGCGcGCUCC-CCCu -5'
21381 3' -61.5 NC_004812.1 + 87064 0.72 0.360932
Target:  5'- gCGCCgCGGGcaGGgGCGCGGGGGGGc -3'
miRNA:   3'- -GUGGaGUUCcaCCgCGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 92111 0.66 0.661863
Target:  5'- gGCCUCcucg-GGCGUGCucuGGGGGAu -3'
miRNA:   3'- gUGGAGuuccaCCGCGCGcu-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 93539 0.66 0.700911
Target:  5'- gGCCggAGGG-GGC-CGUGGGGGcGGAg -3'
miRNA:   3'- gUGGagUUCCaCCGcGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 95854 0.66 0.700911
Target:  5'- aACCggacCGAGGcgcgGGUGCGgugggcCGAGGGGGc -3'
miRNA:   3'- gUGGa---GUUCCa---CCGCGC------GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 96315 0.68 0.534805
Target:  5'- gGCCccCAAGGgGGgGCGCGAcGGcGGGGc -3'
miRNA:   3'- gUGGa-GUUCCaCCgCGCGCU-CC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 96839 0.66 0.671678
Target:  5'- cUACCUCGAGc-GGUGCGaCGGcGGGGuGAu -3'
miRNA:   3'- -GUGGAGUUCcaCCGCGC-GCU-CCCC-CU- -5'
21381 3' -61.5 NC_004812.1 + 99782 0.68 0.563679
Target:  5'- -uCCUCGAGuacGCGCaGCgGAGGGGGAg -3'
miRNA:   3'- guGGAGUUCcacCGCG-CG-CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 100824 0.69 0.469737
Target:  5'- -gUCUCGGGGgcgGGCGcCGCGAcgccGGGGAg -3'
miRNA:   3'- guGGAGUUCCa--CCGC-GCGCUc---CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 101407 0.71 0.368658
Target:  5'- cCACCUCAAGGaGGagcuCGCGCGGuucaucauGGGGGc -3'
miRNA:   3'- -GUGGAGUUCCaCC----GCGCGCU--------CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 101927 0.66 0.652027
Target:  5'- gGCCUCGGGGccccGGaCGCGCGGcgcGGGcGGc -3'
miRNA:   3'- gUGGAGUUCCa---CC-GCGCGCU---CCC-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.