miRNA display CGI


Results 141 - 160 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 102257 0.68 0.563679
Target:  5'- aCACCU-GGGGUcGGCGaG-GAGGGGGGa -3'
miRNA:   3'- -GUGGAgUUCCA-CCGCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 102914 0.72 0.338439
Target:  5'- gCGCCUCGGGGgGGCGgcCGCGAacgagagccgcGGGGGu -3'
miRNA:   3'- -GUGGAGUUCCaCCGC--GCGCU-----------CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 103256 0.66 0.642176
Target:  5'- gAUCUCGcGcaGGCGCGCGGGGGcGAc -3'
miRNA:   3'- gUGGAGUuCcaCCGCGCGCUCCCcCU- -5'
21381 3' -61.5 NC_004812.1 + 103490 0.68 0.554003
Target:  5'- cCACCgUCGgccgccGGGUGaGCGCGCGGaugcucGGGGAc -3'
miRNA:   3'- -GUGG-AGU------UCCAC-CGCGCGCUc-----CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 104030 0.67 0.592949
Target:  5'- gGCCUCGGGGccGuCGCgGCGucGGGGAg -3'
miRNA:   3'- gUGGAGUUCCacC-GCG-CGCucCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 104149 0.66 0.700911
Target:  5'- uGCCgguaggCGgcAGGaGGCGaCGCGGGcGGGGGg -3'
miRNA:   3'- gUGGa-----GU--UCCaCCGC-GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 104323 0.71 0.408954
Target:  5'- gCGCCUCcGGG-GGCG-GCGAGGaGGAc -3'
miRNA:   3'- -GUGGAGuUCCaCCGCgCGCUCCcCCU- -5'
21381 3' -61.5 NC_004812.1 + 105410 0.69 0.478797
Target:  5'- aACCaCGuGG-GG-GCGCGAGGGGGGa -3'
miRNA:   3'- gUGGaGUuCCaCCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 106579 0.72 0.345822
Target:  5'- uCGCC--AGGG-GGCcCGCGGGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCaCCGcGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 106722 0.71 0.368658
Target:  5'- -cCCUCGGGGUcggcggcggGGCccaucguccggGCGCGGGGGGGu -3'
miRNA:   3'- guGGAGUUCCA---------CCG-----------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 106779 0.74 0.258828
Target:  5'- gGCgUCGGGcGgGGCGCGCGGGaGGGGGc -3'
miRNA:   3'- gUGgAGUUC-CaCCGCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 107229 0.67 0.583158
Target:  5'- gGCgUCGAGGcacagGGCG-GCGAGgccGGGGAa -3'
miRNA:   3'- gUGgAGUUCCa----CCGCgCGCUC---CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 110634 0.66 0.691209
Target:  5'- gACCUCcgcgcGG-GGCGgagaCGCGGGcGGGGAg -3'
miRNA:   3'- gUGGAGuu---CCaCCGC----GCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 113241 0.66 0.700911
Target:  5'- gGCCgguGGGccGCuCGCGGGGGGGGu -3'
miRNA:   3'- gUGGaguUCCacCGcGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 115335 0.66 0.691209
Target:  5'- gCGCCUCGcuGUagcucgGGaGCGCGGGcGGGGAc -3'
miRNA:   3'- -GUGGAGUucCA------CCgCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 115514 0.74 0.258828
Target:  5'- uCACCUCGAGGaacgGGCGgGgaguacgGAGGGGGGg -3'
miRNA:   3'- -GUGGAGUUCCa---CCGCgCg------CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 116202 0.68 0.5234
Target:  5'- cCGCCggaggaaaauGGGgaggGGCGCGCaaauGGGGGGGGg -3'
miRNA:   3'- -GUGGagu-------UCCa---CCGCGCG----CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 117595 0.66 0.691209
Target:  5'- gGCUuuUCGGGGUuccgGGcCGgGgGAGGGGGGg -3'
miRNA:   3'- gUGG--AGUUCCA----CC-GCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 119982 0.73 0.303255
Target:  5'- cCAgCUCcAGGUGGCGCGCcacgagacGGGcGGGGGc -3'
miRNA:   3'- -GUgGAGuUCCACCGCGCG--------CUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 120364 0.68 0.534805
Target:  5'- aACC-CGcGGgGGCGCGCGGccGGGGGc -3'
miRNA:   3'- gUGGaGUuCCaCCGCGCGCU--CCCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.