Results 101 - 120 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21381 | 3' | -61.5 | NC_004812.1 | + | 82007 | 0.69 | 0.497167 |
Target: 5'- aACC-CGGGGUcGGagaGCacgGCGGGGGGGAc -3' miRNA: 3'- gUGGaGUUCCA-CCg--CG---CGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 80345 | 0.74 | 0.273432 |
Target: 5'- gCGCCgUCGAGGcggcgcgcgcgggccUGGcCGCcuGCGAGGGGGAg -3' miRNA: 3'- -GUGG-AGUUCC---------------ACC-GCG--CGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 78605 | 0.69 | 0.515848 |
Target: 5'- uGCCUCGucGGUGGaaGCgGCGGcGGGGGGc -3' miRNA: 3'- gUGGAGUu-CCACCg-CG-CGCU-CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 76929 | 0.66 | 0.652027 |
Target: 5'- gCACCcCGAGGcgaGGUGgGCGGGGGcGAu -3' miRNA: 3'- -GUGGaGUUCCa--CCGCgCGCUCCCcCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 76168 | 0.66 | 0.700911 |
Target: 5'- -cCCUCuugcgggcggcuGGGGUGgGCG-GCGGGGaGGGAa -3' miRNA: 3'- guGGAG------------UUCCAC-CGCgCGCUCC-CCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 74905 | 0.67 | 0.621472 |
Target: 5'- gCGCgUCcAGGcgcgcgugcaGGCGCGCGAgcgggucGGGGGAg -3' miRNA: 3'- -GUGgAGuUCCa---------CCGCGCGCU-------CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 74340 | 0.7 | 0.434412 |
Target: 5'- gCACCUggCGAGccugcGGCGCGCGcugguGGGGGAg -3' miRNA: 3'- -GUGGA--GUUCca---CCGCGCGCu----CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 73181 | 0.68 | 0.525294 |
Target: 5'- gGCCgguaCAGGGcgugGGCGgGCGGGGccGGGAc -3' miRNA: 3'- gUGGa---GUUCCa---CCGCgCGCUCC--CCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 72493 | 0.69 | 0.497167 |
Target: 5'- gCGCCUCGGGGUcggggGGCGCGCcgccGccGGGGu -3' miRNA: 3'- -GUGGAGUUCCA-----CCGCGCG----CucCCCCu -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 72300 | 0.7 | 0.463448 |
Target: 5'- gGCCggggCGGGGggacggaucgaucgGGCGCggccgggcgggccGCGGGGGGGAg -3' miRNA: 3'- gUGGa---GUUCCa-------------CCGCG-------------CGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 71793 | 0.7 | 0.433549 |
Target: 5'- -uCCgUCAGGGUgaucuGGCGCGUGAggugguggcggaaGGGGGAg -3' miRNA: 3'- guGG-AGUUCCA-----CCGCGCGCU-------------CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 71347 | 0.66 | 0.661863 |
Target: 5'- gGCUUCGAcGGgGGCGUGgGuAGGGaGGAa -3' miRNA: 3'- gUGGAGUU-CCaCCGCGCgC-UCCC-CCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 71132 | 0.82 | 0.071447 |
Target: 5'- gCGCCUCGGGGguucgggGGCGCGCGAguucgucGGGGGGc -3' miRNA: 3'- -GUGGAGUUCCa------CCGCGCGCU-------CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 70908 | 0.67 | 0.583158 |
Target: 5'- gAUCUCGcgcGGG-GGgGCGgGAGGuGGGAu -3' miRNA: 3'- gUGGAGU---UCCaCCgCGCgCUCC-CCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 70851 | 0.74 | 0.269105 |
Target: 5'- aCGCC-CAcaggagacgcggggGGcGUGGCuGCGCGGGGGGGGc -3' miRNA: 3'- -GUGGaGU--------------UC-CACCG-CGCGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 70254 | 0.73 | 0.296565 |
Target: 5'- cCGCCg-GGGGUGGCGgauCGCGGuGGGGGGc -3' miRNA: 3'- -GUGGagUUCCACCGC---GCGCU-CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 68221 | 0.68 | 0.554003 |
Target: 5'- gGCCggCcGGG-GGUGCGCGGGGGccGGGg -3' miRNA: 3'- gUGGa-GuUCCaCCGCGCGCUCCC--CCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 68167 | 0.68 | 0.573399 |
Target: 5'- -cCCggCAGGGUcGGCGgcCGCGGGcGGGGGc -3' miRNA: 3'- guGGa-GUUCCA-CCGC--GCGCUC-CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 64547 | 0.67 | 0.632317 |
Target: 5'- gGCCaUCAAGGUGGUGUGCaacucgguguacGGGuucacGGGGGu -3' miRNA: 3'- gUGG-AGUUCCACCGCGCG------------CUC-----CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 60533 | 0.66 | 0.651042 |
Target: 5'- -cCCUCGAGGaccgUGuGCGCGCggaucgaGAGGGaGGGc -3' miRNA: 3'- guGGAGUUCC----AC-CGCGCG-------CUCCC-CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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