miRNA display CGI


Results 121 - 140 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 59623 0.68 0.525294
Target:  5'- gGCgUgGGGGUGGgGCGgGAgcggccgcGGGGGAu -3'
miRNA:   3'- gUGgAgUUCCACCgCGCgCU--------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 57242 0.68 0.534805
Target:  5'- gACCgagCGuGGgcgGGCGCuGgGGGGGGGGg -3'
miRNA:   3'- gUGGa--GUuCCa--CCGCG-CgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 56991 0.66 0.652027
Target:  5'- gCACCUgCAGgcGGUGGUGaGCGGGGGccugcGGAu -3'
miRNA:   3'- -GUGGA-GUU--CCACCGCgCGCUCCC-----CCU- -5'
21381 3' -61.5 NC_004812.1 + 56720 0.68 0.573399
Target:  5'- aCGCC-CGAGGgacucgugGGCGCGgcCGuGGGGGc -3'
miRNA:   3'- -GUGGaGUUCCa-------CCGCGC--GCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 56577 0.7 0.443101
Target:  5'- aCGCgCUCGAGcGcGGCgauggcgccGCGCGGGGGGGu -3'
miRNA:   3'- -GUG-GAGUUC-CaCCG---------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 54861 0.7 0.425823
Target:  5'- cUACCcgGGGGUGGCGgGCacGGGGGAc -3'
miRNA:   3'- -GUGGagUUCCACCGCgCGcuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 54716 0.7 0.460766
Target:  5'- gCGCCUCGGGGcgcccuagcccGGCGCGCccccGGGGGu -3'
miRNA:   3'- -GUGGAGUUCCa----------CCGCGCGcu--CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 51511 0.68 0.534805
Target:  5'- gGCCgcgCAGGGUcccgcccccGGCGCaGCGGcgccGGGGGGc -3'
miRNA:   3'- gUGGa--GUUCCA---------CCGCG-CGCU----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 47822 0.71 0.376497
Target:  5'- uCACCgguuucccgCAAGGgcGGUGgGgGAGGGGGAg -3'
miRNA:   3'- -GUGGa--------GUUCCa-CCGCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 47514 0.66 0.642176
Target:  5'- gGCgCg-GAGGUGGCcgGCcagGCGGGGGGGGc -3'
miRNA:   3'- gUG-GagUUCCACCG--CG---CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 43883 0.73 0.316981
Target:  5'- aACCgCAGGGaGGCG-GCGcAGGGGGAg -3'
miRNA:   3'- gUGGaGUUCCaCCGCgCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 43480 0.66 0.687316
Target:  5'- aGCCuUCGGGGgaacgaccgccaGCGCcaucaGCGAGGGGGGc -3'
miRNA:   3'- gUGG-AGUUCCac----------CGCG-----CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 41011 0.66 0.691209
Target:  5'- -cCCUCAGGGUuucccaccgGGuCGcCGUGGGGGuGGGg -3'
miRNA:   3'- guGGAGUUCCA---------CC-GC-GCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 40739 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40700 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40660 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40620 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40582 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40543 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40497 0.77 0.164729
Target:  5'- gGCCcCGAGGgcgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- gUGGaGUUCCa--CCGCGCgCUC-CCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.