miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 7935 0.71 0.368658
Target:  5'- gCGCCggcgcggcCGGGG-GGCGCGUccGGGGGGGGc -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCG--CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 47822 0.71 0.376497
Target:  5'- uCACCgguuucccgCAAGGgcGGUGgGgGAGGGGGAg -3'
miRNA:   3'- -GUGGa--------GUUCCa-CCGCgCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148525 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148551 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148577 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148603 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148629 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148655 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148681 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGa -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148706 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 148499 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 72300 0.7 0.463448
Target:  5'- gGCCggggCGGGGggacggaucgaucgGGCGCggccgggcgggccGCGGGGGGGAg -3'
miRNA:   3'- gUGGa---GUUCCa-------------CCGCG-------------CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148198 0.71 0.400676
Target:  5'- gGCCUCAcGGGUcgagGGC-UGCGGGGGGGc -3'
miRNA:   3'- gUGGAGU-UCCA----CCGcGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 7675 0.7 0.417337
Target:  5'- gGCCgggagCGGGGgugGGCGgGCGcGGGGGu -3'
miRNA:   3'- gUGGa----GUUCCa--CCGCgCGCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 34429 0.7 0.417337
Target:  5'- uCGCCggggcgucgcgCGGGGUGGgaugguCGUGgGAGGGGGAa -3'
miRNA:   3'- -GUGGa----------GUUCCACC------GCGCgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 7993 0.7 0.434412
Target:  5'- gCGCCggUCAGGGgGGCGCucccGCGAccccGGGGGGc -3'
miRNA:   3'- -GUGG--AGUUCCaCCGCG----CGCU----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 56577 0.7 0.443101
Target:  5'- aCGCgCUCGAGcGcGGCgauggcgccGCGCGGGGGGGu -3'
miRNA:   3'- -GUG-GAGUUC-CaCCG---------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 8386 0.7 0.451886
Target:  5'- gGCC-CGGGGUccgGGgGCGCGGcGGGGGc -3'
miRNA:   3'- gUGGaGUUCCA---CCgCGCGCU-CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 82122 0.7 0.451886
Target:  5'- gCGCCgacgaCGGGGUGGCGgGUGccacGGGGGu -3'
miRNA:   3'- -GUGGa----GUUCCACCGCgCGCu---CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 6687 0.7 0.460766
Target:  5'- gACgaCAGGG-GGCGUGUguguuGGGGGGGAg -3'
miRNA:   3'- gUGgaGUUCCaCCGCGCG-----CUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.