Results 121 - 140 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21381 | 3' | -61.5 | NC_004812.1 | + | 12024 | 0.71 | 0.408954 |
Target: 5'- cCACCuUCAGGaacaccacGUGGCGCGCcgccgucgcguuGGGGGGGu -3' miRNA: 3'- -GUGG-AGUUC--------CACCGCGCG------------CUCCCCCu -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 104323 | 0.71 | 0.408954 |
Target: 5'- gCGCCUCcGGG-GGCG-GCGAGGaGGAc -3' miRNA: 3'- -GUGGAGuUCCaCCGCgCGCUCCcCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 38576 | 0.7 | 0.417337 |
Target: 5'- gGCCgggagCGGGGgugGGCGgGCGcGGGGGu -3' miRNA: 3'- gUGGa----GUUCCa--CCGCgCGCuCCCCCu -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 122290 | 0.7 | 0.420719 |
Target: 5'- gCGCCUggccggcgcgcgugaCGGGGgcgaacgcgUGGUGCGCGuGGGGGGu -3' miRNA: 3'- -GUGGA---------------GUUCC---------ACCGCGCGCuCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 29424 | 0.72 | 0.331171 |
Target: 5'- cCGCUUUcGGGaGGCGgaCGCGGGGGGGGg -3' miRNA: 3'- -GUGGAGuUCCaCCGC--GCGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 2038 | 0.73 | 0.31006 |
Target: 5'- gGCCUCGgucggcggcGGGgGGCGCGgGGGaGGGGGc -3' miRNA: 3'- gUGGAGU---------UCCaCCGCGCgCUC-CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 10381 | 0.77 | 0.156845 |
Target: 5'- aCGCCUCGGGGgucugGGCcggcgGgGUGAGGGGGAu -3' miRNA: 3'- -GUGGAGUUCCa----CCG-----CgCGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 40497 | 0.77 | 0.164729 |
Target: 5'- gGCCcCGAGGgcgGGCGCGgGGGaGGGGAg -3' miRNA: 3'- gUGGaGUUCCa--CCGCGCgCUC-CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 18444 | 0.77 | 0.177223 |
Target: 5'- gGCCgCGuccGGUGGCGCgGCGGGGGGGc -3' miRNA: 3'- gUGGaGUu--CCACCGCG-CGCUCCCCCu -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 153432 | 0.76 | 0.181571 |
Target: 5'- aGCCggcggugagUCGGGGgcggGGgGCGCGGGGGGGGg -3' miRNA: 3'- gUGG---------AGUUCCa---CCgCGCGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 22952 | 0.75 | 0.209687 |
Target: 5'- uCGCCgcucggggCGAGG-GGUGCGCGGGGGaGGGg -3' miRNA: 3'- -GUGGa-------GUUCCaCCGCGCGCUCCC-CCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 37700 | 0.75 | 0.232626 |
Target: 5'- uGCCUCGGGG-GGCGCGCcgggcgucuggggcuGGGuGGGGGg -3' miRNA: 3'- gUGGAGUUCCaCCGCGCG---------------CUC-CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 106779 | 0.74 | 0.258828 |
Target: 5'- gGCgUCGGGcGgGGCGCGCGGGaGGGGGc -3' miRNA: 3'- gUGgAGUUC-CaCCGCGCGCUC-CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 30350 | 0.74 | 0.264834 |
Target: 5'- gCGCCggGAGGcgaGGCGCGCGcggcGGGGGAg -3' miRNA: 3'- -GUGGagUUCCa--CCGCGCGCu---CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 11906 | 0.74 | 0.270953 |
Target: 5'- gACCUCGgcgaugggguggGGGUGGgGCgGCGGGGcGGGGg -3' miRNA: 3'- gUGGAGU------------UCCACCgCG-CGCUCC-CCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 80345 | 0.74 | 0.273432 |
Target: 5'- gCGCCgUCGAGGcggcgcgcgcgggccUGGcCGCcuGCGAGGGGGAg -3' miRNA: 3'- -GUGG-AGUUCC---------------ACC-GCG--CGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 33971 | 0.73 | 0.28999 |
Target: 5'- aGCCUCGccgguGGGcGGCgggacgacgGCGUGGGGGGGAg -3' miRNA: 3'- gUGGAGU-----UCCaCCG---------CGCGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 152635 | 0.73 | 0.296565 |
Target: 5'- uGCC-CGGGccGGCGCGCGGcGGGGGGg -3' miRNA: 3'- gUGGaGUUCcaCCGCGCGCU-CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 70254 | 0.73 | 0.296565 |
Target: 5'- cCGCCg-GGGGUGGCGgauCGCGGuGGGGGGc -3' miRNA: 3'- -GUGGagUUCCACCGC---GCGCU-CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 119982 | 0.73 | 0.303255 |
Target: 5'- cCAgCUCcAGGUGGCGCGCcacgagacGGGcGGGGGc -3' miRNA: 3'- -GUgGAGuUCCACCGCGCG--------CUC-CCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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