miRNA display CGI


Results 141 - 160 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 106779 0.74 0.258828
Target:  5'- gGCgUCGGGcGgGGCGCGCGGGaGGGGGc -3'
miRNA:   3'- gUGgAGUUC-CaCCGCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 37700 0.75 0.232626
Target:  5'- uGCCUCGGGG-GGCGCGCcgggcgucuggggcuGGGuGGGGGg -3'
miRNA:   3'- gUGGAGUUCCaCCGCGCG---------------CUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 22952 0.75 0.209687
Target:  5'- uCGCCgcucggggCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 153432 0.76 0.181571
Target:  5'- aGCCggcggugagUCGGGGgcggGGgGCGCGGGGGGGGg -3'
miRNA:   3'- gUGG---------AGUUCCa---CCgCGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 18444 0.77 0.177223
Target:  5'- gGCCgCGuccGGUGGCGCgGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUu--CCACCGCG-CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 40497 0.77 0.164729
Target:  5'- gGCCcCGAGGgcgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- gUGGaGUUCCa--CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 10381 0.77 0.156845
Target:  5'- aCGCCUCGGGGgucugGGCcggcgGgGUGAGGGGGAu -3'
miRNA:   3'- -GUGGAGUUCCa----CCG-----CgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 152635 0.73 0.296565
Target:  5'- uGCC-CGGGccGGCGCGCGGcGGGGGGg -3'
miRNA:   3'- gUGGaGUUCcaCCGCGCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 70254 0.73 0.296565
Target:  5'- cCGCCg-GGGGUGGCGgauCGCGGuGGGGGGc -3'
miRNA:   3'- -GUGGagUUCCACCGC---GCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 106722 0.71 0.368658
Target:  5'- -cCCUCGGGGUcggcggcggGGCccaucguccggGCGCGGGGGGGu -3'
miRNA:   3'- guGGAGUUCCA---------CCG-----------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 38836 0.71 0.368658
Target:  5'- gCGCCggcgcggcCGGGG-GGCGCGUccGGGGGGGGc -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCG--CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 101407 0.71 0.368658
Target:  5'- cCACCUCAAGGaGGagcuCGCGCGGuucaucauGGGGGc -3'
miRNA:   3'- -GUGGAGUUCCaCC----GCGCGCU--------CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 87064 0.72 0.360932
Target:  5'- gCGCCgCGGGcaGGgGCGCGGGGGGGc -3'
miRNA:   3'- -GUGGaGUUCcaCCgCGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 143871 0.72 0.360932
Target:  5'- gCugUUCGGGGaGGCGUuCGAGGGGGc -3'
miRNA:   3'- -GugGAGUUCCaCCGCGcGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 106579 0.72 0.345822
Target:  5'- uCGCC--AGGG-GGCcCGCGGGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCaCCGcGCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 36862 0.72 0.338439
Target:  5'- gGCC-CGGGGaGGC-CGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUUCCaCCGcGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 85648 0.72 0.338439
Target:  5'- aCGCCUCGGGGcgcUGGUGC-CGGGGcGGGu -3'
miRNA:   3'- -GUGGAGUUCC---ACCGCGcGCUCC-CCCu -5'
21381 3' -61.5 NC_004812.1 + 29424 0.72 0.331171
Target:  5'- cCGCUUUcGGGaGGCGgaCGCGGGGGGGGg -3'
miRNA:   3'- -GUGGAGuUCCaCCGC--GCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 2038 0.73 0.31006
Target:  5'- gGCCUCGgucggcggcGGGgGGCGCGgGGGaGGGGGc -3'
miRNA:   3'- gUGGAGU---------UCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 119982 0.73 0.303255
Target:  5'- cCAgCUCcAGGUGGCGCGCcacgagacGGGcGGGGGc -3'
miRNA:   3'- -GUgGAGuUCCACCGCGCG--------CUC-CCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.