miRNA display CGI


Results 161 - 180 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 40497 0.77 0.164729
Target:  5'- gGCCcCGAGGgcgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- gUGGaGUUCCa--CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 10381 0.77 0.156845
Target:  5'- aCGCCUCGGGGgucugGGCcggcgGgGUGAGGGGGAu -3'
miRNA:   3'- -GUGGAGUUCCa----CCG-----CgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 85648 0.72 0.338439
Target:  5'- aCGCCUCGGGGcgcUGGUGC-CGGGGcGGGu -3'
miRNA:   3'- -GUGGAGUUCC---ACCGCGcGCUCC-CCCu -5'
21381 3' -61.5 NC_004812.1 + 36862 0.72 0.338439
Target:  5'- gGCC-CGGGGaGGC-CGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUUCCaCCGcGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 71793 0.7 0.433549
Target:  5'- -uCCgUCAGGGUgaucuGGCGCGUGAggugguggcggaaGGGGGAg -3'
miRNA:   3'- guGG-AGUUCCA-----CCGCGCGCU-------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 120853 0.7 0.425823
Target:  5'- aCGCCUCcccccugcgGGGGcUGGCGCuguaGCGGGGcGGGGc -3'
miRNA:   3'- -GUGGAG---------UUCC-ACCGCG----CGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 54861 0.7 0.425823
Target:  5'- cUACCcgGGGGUGGCGgGCacGGGGGAc -3'
miRNA:   3'- -GUGGagUUCCACCGCgCGcuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 122290 0.7 0.420719
Target:  5'- gCGCCUggccggcgcgcgugaCGGGGgcgaacgcgUGGUGCGCGuGGGGGGu -3'
miRNA:   3'- -GUGGA---------------GUUCC---------ACCGCGCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 38576 0.7 0.417337
Target:  5'- gGCCgggagCGGGGgugGGCGgGCGcGGGGGu -3'
miRNA:   3'- gUGGa----GUUCCa--CCGCgCGCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 104323 0.71 0.408954
Target:  5'- gCGCCUCcGGG-GGCG-GCGAGGaGGAc -3'
miRNA:   3'- -GUGGAGuUCCaCCGCgCGCUCCcCCU- -5'
21381 3' -61.5 NC_004812.1 + 12024 0.71 0.408954
Target:  5'- cCACCuUCAGGaacaccacGUGGCGCGCcgccgucgcguuGGGGGGGu -3'
miRNA:   3'- -GUGG-AGUUC--------CACCGCGCG------------CUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 38895 0.71 0.400676
Target:  5'- gCGCCggUCAGGGgGGCGCucccGCGAcccGGGGGGc -3'
miRNA:   3'- -GUGG--AGUUCCaCCGCG----CGCU---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 141765 0.71 0.384447
Target:  5'- gGCCgCGGGGcGGCgucgaacggccGCGCGGGGGGGc -3'
miRNA:   3'- gUGGaGUUCCaCCG-----------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 10471 0.71 0.384447
Target:  5'- uGCC---GGGUGGgGacCGCGGGGGGGAg -3'
miRNA:   3'- gUGGaguUCCACCgC--GCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 106722 0.71 0.368658
Target:  5'- -cCCUCGGGGUcggcggcggGGCccaucguccggGCGCGGGGGGGu -3'
miRNA:   3'- guGGAGUUCCA---------CCG-----------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 38836 0.71 0.368658
Target:  5'- gCGCCggcgcggcCGGGG-GGCGCGUccGGGGGGGGc -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCG--CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 101407 0.71 0.368658
Target:  5'- cCACCUCAAGGaGGagcuCGCGCGGuucaucauGGGGGc -3'
miRNA:   3'- -GUGGAGUUCCaCC----GCGCGCU--------CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 87064 0.72 0.360932
Target:  5'- gCGCCgCGGGcaGGgGCGCGGGGGGGc -3'
miRNA:   3'- -GUGGaGUUCcaCCgCGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 143871 0.72 0.360932
Target:  5'- gCugUUCGGGGaGGCGUuCGAGGGGGc -3'
miRNA:   3'- -GugGAGUUCCaCCGCGcGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 106579 0.72 0.345822
Target:  5'- uCGCC--AGGG-GGCcCGCGGGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCaCCGcGCGCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.