miRNA display CGI


Results 81 - 100 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 23146 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 23276 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 30473 0.69 0.473351
Target:  5'- aGCCUCGGGGuugcagcccgcgugcUcgcGGCGCGgGGGaGGGGAc -3'
miRNA:   3'- gUGGAGUUCC---------------A---CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 7544 0.69 0.506471
Target:  5'- cCGCC-CAcucGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGU---UCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29713 0.69 0.515848
Target:  5'- gGCCgCGaagagcGGGccuUGGUGCGCGAGGGcGGGc -3'
miRNA:   3'- gUGGaGU------UCC---ACCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 103490 0.68 0.554003
Target:  5'- cCACCgUCGgccgccGGGUGaGCGCGCGGaugcucGGGGAc -3'
miRNA:   3'- -GUGG-AGU------UCCAC-CGCGCGCUc-----CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 99782 0.68 0.563679
Target:  5'- -uCCUCGAGuacGCGCaGCgGAGGGGGAg -3'
miRNA:   3'- guGGAGUUCcacCGCG-CG-CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 38576 0.7 0.417337
Target:  5'- gGCCgggagCGGGGgugGGCGgGCGcGGGGGu -3'
miRNA:   3'- gUGGa----GUUCCa--CCGCgCGCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 38895 0.71 0.400676
Target:  5'- gCGCCggUCAGGGgGGCGCucccGCGAcccGGGGGGc -3'
miRNA:   3'- -GUGG--AGUUCCaCCGCG----CGCU---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 38836 0.71 0.368658
Target:  5'- gCGCCggcgcggcCGGGG-GGCGCGUccGGGGGGGGc -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCG--CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 5035 0.67 0.622458
Target:  5'- gACCcCGggccGGG-GGCGCGCGAGGGc-- -3'
miRNA:   3'- gUGGaGU----UCCaCCGCGCGCUCCCccu -5'
21381 3' -61.5 NC_004812.1 + 16755 0.66 0.642176
Target:  5'- gGCUcagUCGGGG-GGCGCgggggccggaggGUGAGGGGGc -3'
miRNA:   3'- gUGG---AGUUCCaCCGCG------------CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 29185 0.66 0.646117
Target:  5'- uGCuCUCGagaAGGUGGCGUGCGguGcacgugugguuuauuGGGGGGc -3'
miRNA:   3'- gUG-GAGU---UCCACCGCGCGC--U---------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 56991 0.66 0.652027
Target:  5'- gCACCUgCAGgcGGUGGUGaGCGGGGGccugcGGAu -3'
miRNA:   3'- -GUGGA-GUU--CCACCGCgCGCUCCC-----CCU- -5'
21381 3' -61.5 NC_004812.1 + 96839 0.66 0.671678
Target:  5'- cUACCUCGAGc-GGUGCGaCGGcGGGGuGAu -3'
miRNA:   3'- -GUGGAGUUCcaCCGCGC-GCU-CCCC-CU- -5'
21381 3' -61.5 NC_004812.1 + 22952 0.75 0.209687
Target:  5'- uCGCCgcucggggCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- -GUGGa-------GUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 30350 0.74 0.264834
Target:  5'- gCGCCggGAGGcgaGGCGCGCGcggcGGGGGAg -3'
miRNA:   3'- -GUGGagUUCCa--CCGCGCGCu---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 152635 0.73 0.296565
Target:  5'- uGCC-CGGGccGGCGCGCGGcGGGGGGg -3'
miRNA:   3'- gUGGaGUUCcaCCGCGCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 2038 0.73 0.31006
Target:  5'- gGCCUCGgucggcggcGGGgGGCGCGgGGGaGGGGGc -3'
miRNA:   3'- gUGGAGU---------UCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 143871 0.72 0.360932
Target:  5'- gCugUUCGGGGaGGCGUuCGAGGGGGc -3'
miRNA:   3'- -GugGAGUUCCaCCGCGcGCUCCCCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.