miRNA display CGI


Results 101 - 120 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 40582 0.66 0.700911
Target:  5'- -----gGAGGgGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCaCCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 40660 0.66 0.700911
Target:  5'- -----gGAGGggGGCGCGgGGGaGGGGAg -3'
miRNA:   3'- guggagUUCCa-CCGCGCgCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 37420 0.68 0.563679
Target:  5'- cCACCaggagCAGGGgggGGCGgGgggcCGAGGGGGc -3'
miRNA:   3'- -GUGGa----GUUCCa--CCGCgC----GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 11302 0.68 0.534805
Target:  5'- gCGCCgCGcGG-GGCGcCGCGGGGcGGGGg -3'
miRNA:   3'- -GUGGaGUuCCaCCGC-GCGCUCC-CCCU- -5'
21381 3' -61.5 NC_004812.1 + 56720 0.68 0.573399
Target:  5'- aCGCC-CGAGGgacucgugGGCGCGgcCGuGGGGGc -3'
miRNA:   3'- -GUGGaGUUCCa-------CCGCGC--GCuCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 106722 0.71 0.368658
Target:  5'- -cCCUCGGGGUcggcggcggGGCccaucguccggGCGCGGGGGGGu -3'
miRNA:   3'- guGGAGUUCCA---------CCG-----------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 38895 0.71 0.400676
Target:  5'- gCGCCggUCAGGGgGGCGCucccGCGAcccGGGGGGc -3'
miRNA:   3'- -GUGG--AGUUCCaCCGCG----CGCU---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 54861 0.7 0.425823
Target:  5'- cUACCcgGGGGUGGCGgGCacGGGGGAc -3'
miRNA:   3'- -GUGGagUUCCACCGCgCGcuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 74340 0.7 0.434412
Target:  5'- gCACCUggCGAGccugcGGCGCGCGcugguGGGGGAg -3'
miRNA:   3'- -GUGGA--GUUCca---CCGCGCGCu----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 100824 0.69 0.469737
Target:  5'- -gUCUCGGGGgcgGGCGcCGCGAcgccGGGGAg -3'
miRNA:   3'- guGGAGUUCCa--CCGC-GCGCUc---CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 23042 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 23198 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 23276 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 145741 0.69 0.478797
Target:  5'- gCGCCcgcgggUCGGGG-GGCucgucggucgucGCGCGGGGGGGu -3'
miRNA:   3'- -GUGG------AGUUCCaCCG------------CGCGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 7544 0.69 0.506471
Target:  5'- cCGCC-CAcucGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGU---UCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 147493 0.68 0.525294
Target:  5'- --aCUCGAcG-GGCG-GCGAGGGGGAc -3'
miRNA:   3'- gugGAGUUcCaCCGCgCGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148499 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 51511 0.68 0.534805
Target:  5'- gGCCgcgCAGGGUcccgcccccGGCGCaGCGGcgccGGGGGGc -3'
miRNA:   3'- gUGGa--GUUCCA---------CCGCG-CGCU----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 57242 0.68 0.534805
Target:  5'- gACCgagCGuGGgcgGGCGCuGgGGGGGGGGg -3'
miRNA:   3'- gUGGa--GUuCCa--CCGCG-CgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 36893 0.68 0.525294
Target:  5'- gCGCCg-AGGGUcGGgGgGaCGAGGGGGAc -3'
miRNA:   3'- -GUGGagUUCCA-CCgCgC-GCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.