miRNA display CGI


Results 121 - 140 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 147693 0.66 0.699943
Target:  5'- aACCUCAucaacccGGG-GGUcgugugGCGCGGGGGGc- -3'
miRNA:   3'- gUGGAGU-------UCCaCCG------CGCGCUCCCCcu -5'
21381 3' -61.5 NC_004812.1 + 73181 0.68 0.525294
Target:  5'- gGCCgguaCAGGGcgugGGCGgGCGGGGccGGGAc -3'
miRNA:   3'- gUGGa---GUUCCa---CCGCgCGCUCC--CCCU- -5'
21381 3' -61.5 NC_004812.1 + 148460 0.74 0.258828
Target:  5'- uCGCCcgcUCGGGGcgaggGGUGCGCGGGGGaGGGg -3'
miRNA:   3'- -GUGG---AGUUCCa----CCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 51511 0.68 0.534805
Target:  5'- gGCCgcgCAGGGUcccgcccccGGCGCaGCGGcgccGGGGGGc -3'
miRNA:   3'- gUGGa--GUUCCA---------CCGCG-CGCU----CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 57242 0.68 0.534805
Target:  5'- gACCgagCGuGGgcgGGCGCuGgGGGGGGGGg -3'
miRNA:   3'- gUGGa--GUuCCa--CCGCG-CgCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 43883 0.73 0.316981
Target:  5'- aACCgCAGGGaGGCG-GCGcAGGGGGAg -3'
miRNA:   3'- gUGGaGUUCCaCCGCgCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 121734 0.73 0.316981
Target:  5'- uGCC-CGGGccGGCGCGCGGcGGGGGGc -3'
miRNA:   3'- gUGGaGUUCcaCCGCGCGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148499 0.69 0.469737
Target:  5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3'
miRNA:   3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 72300 0.7 0.463448
Target:  5'- gGCCggggCGGGGggacggaucgaucgGGCGCggccgggcgggccGCGGGGGGGAg -3'
miRNA:   3'- gUGGa---GUUCCa-------------CCGCG-------------CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 6687 0.7 0.460766
Target:  5'- gACgaCAGGG-GGCGUGUguguuGGGGGGGAg -3'
miRNA:   3'- gUGgaGUUCCaCCGCGCG-----CUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 82122 0.7 0.451886
Target:  5'- gCGCCgacgaCGGGGUGGCGgGUGccacGGGGGu -3'
miRNA:   3'- -GUGGa----GUUCCACCGCgCGCu---CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 8386 0.7 0.451886
Target:  5'- gGCC-CGGGGUccgGGgGCGCGGcGGGGGc -3'
miRNA:   3'- gUGGaGUUCCA---CCgCGCGCU-CCCCCu -5'
21381 3' -61.5 NC_004812.1 + 95854 0.66 0.700911
Target:  5'- aACCggacCGAGGcgcgGGUGCGgugggcCGAGGGGGc -3'
miRNA:   3'- gUGGa---GUUCCa---CCGCGC------GCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 78605 0.69 0.515848
Target:  5'- uGCCUCGucGGUGGaaGCgGCGGcGGGGGGc -3'
miRNA:   3'- gUGGAGUu-CCACCg-CG-CGCU-CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 30172 0.68 0.525294
Target:  5'- aACCU--AGGUGccGCGCGCGGcugccuGGGGGGc -3'
miRNA:   3'- gUGGAguUCCAC--CGCGCGCU------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 93539 0.66 0.700911
Target:  5'- gGCCggAGGG-GGC-CGUGGGGGcGGAg -3'
miRNA:   3'- gUGGagUUCCaCCGcGCGCUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 115335 0.66 0.691209
Target:  5'- gCGCCUCGcuGUagcucgGGaGCGCGGGcGGGGAc -3'
miRNA:   3'- -GUGGAGUucCA------CCgCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 133052 0.69 0.506471
Target:  5'- cCGCC-CAcucGGG-GGCGgGCGcGGGGGGc -3'
miRNA:   3'- -GUGGaGU---UCCaCCGCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 85121 0.69 0.515848
Target:  5'- gACCgcCAAcuaccGG-GGCGCGCGGGcGGGGGc -3'
miRNA:   3'- gUGGa-GUU-----CCaCCGCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155221 0.69 0.515848
Target:  5'- gGCCgCGaagagcGGGccuUGGUGCGCGAGGGcGGGc -3'
miRNA:   3'- gUGGaGU------UCC---ACCGCGCGCUCCC-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.